Query= MSMg01no409_c19.b1 MSMg01no409_c19.b1 CHROMAT_FILE:
MSMg01no409_c19.b1 PHD_FILE: MSMg01no409_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:26 2005
(570 letters)
>mm_chr18_61035478_61036447
Length = 970
Score = 1048 bits (542), Expect = 0.0
Identities = 557/562 (99%)
Strand = Plus / Minus
Query: 5 gaattcacgcatgttcagactatagggtgagggttttccttactattctctgtgattata 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcacgcatgctcagactatagggtgagggttttccttactattctctgtgattata 568
Query: 65 gtcacgtgtgatcaagtcagtactcattagccttatgctccaagaagaaaagccctgttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtcacgtgtgatcaagtcagtactcattagccttatgctccaagaagaaaagccctgttt 508
Query: 125 tttcaaactgcaatatcaacctggttaaaagctgaggtgggtgaagggggaacagagata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttcaaactgcaatatcaacctggttaaaagctgaggtgggtgaagggggaacagagata 448
Query: 185 gagaaacatatacataaagtgagaagaaaaggttttattattttatttgggtaaatatgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gagaaacatatacataaagtgagaagaaaaggttttattattttatttgggtaaatatgg 388
Query: 245 caagtttcagatccaaaacctcttgggggcttctcagctgtttgccttgtctggtctaca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 387 caagtttcagatccaaaacctcttgggggcttctcagctgtttgccttgtctggtctaga 328
Query: 305 gtcccttactttacttcgcctggcttcttaaaatatctacaaagctgaggctacagggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtcccttactttacttcgcctggcttcttaaaatatctacaaagctgaggctacagggag 268
Query: 365 gctgtggcaggcaggcatagaatcaggacactcaatgtacactgccccagtgctgacagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gctgtggcaggcaggcatagaatcaggacactcaatgtacactgccccagtgctgacagg 208
Query: 425 gtgccttggaccaggtcaattgtcctctgcaggcttaatgtcttcacctgtgaaatggag 484
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 gtgccttggaccaggtcgcttgtcctctgcaggcttaatgtcctcacctgtgaaatggag 148
Query: 485 agttgagagttaatcatctctccttatctagggtcttatcttgtgatcttatctgaccta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agttgagagttaatcatctctccttatctagggtcttatcttgtgatcttatctgaccta 88
Query: 545 tgagctgcagattctctagagc 566
||||||||||||||||||||||
Sbjct: 87 tgagctgcagattctctagagc 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_c19.g1 MSMg01no409_c19.g1 CHROMAT_FILE:
MSMg01no409_c19.g1 PHD_FILE: MSMg01no409_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:26 2005
(475 letters)
>mm_chr18_60859644_60860519
Length = 876
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 1 ccaagaggactaccagtggtttttccatctgtgtcccactgcagaggacaccagaaccac 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ccaagaggactaccagtggtttttccatctgtgtcacactgcagaggacaccagaaccac 260
Query: 61 aagtaaacagtgggcctcctggctgccaggtccccatgccagcctgtccactcttccctg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtaaacagtggacctcctggctgccaggtccccatgccagcctgtccactcttccctg 320
Query: 121 gctgggaggcctcctaggtcagtaccc-tcctcctaccagccctgggctgtagagcactc 179
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tctgggaagcctcctaggtcaatacccctcctcctaccagccctgggctgtagagcactc 380
Query: 180 acaggattgaggagcacagtgaggaagagctcgcccccattgatgatcttgtccagctca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggattgaggagcacagtgaggaagagctcgcccccattgatgatcttgtccagctca 440
Query: 240 ctggagcctccagggtactcgttgtagaagatggtgtgtgtaaagaggccacaggtctgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggagcctccagggtactcgttgtagaagatggtgtgtgtaaagaggccacaggtctgc 500
Query: 300 cgagggaggacctgagaagaagcacgagagaggccatggtatctccagtcatggtcaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgagggaggacctgagaagaagcacgagagaggccatggtatctccagtcatggtcaaga 560
Query: 360 aaggaaggctgcttcctcaggagaagggctggggcctcctcagggagatgctctcctcta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggaaggctgcttcctcaggagaagggctggggcctcctcagggagatgctctcctcta 620
Query: 420 aggccacccagtccctactcctgggagtccttcttcccaagggctctacagcctgc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggccacccagtccctactcctgggagtccttcttcccaagggctctacagcctgc 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
