Query= MSMg01no409_i21.b1 MSMg01no409_i21.b1 CHROMAT_FILE:
MSMg01no409_i21.b1 PHD_FILE: MSMg01no409_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:57 2005
(532 letters)
>mm_chr18_53295337_53296274
Length = 938
Score = 897 bits (464), Expect = 0.0
Identities = 500/522 (95%), Gaps = 18/522 (3%)
Strand = Plus / Minus
Query: 1 acaggttgagagggcagaccacagctgtagtgtgatatgcaaatcagatagcttcccatt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 522 acaggttgagagggcagaccacagctgcagtgtgatatgcaaatcagatagcttcccatt 463
Query: 61 gtcttccagacgtttcttcaacactggtagctcaggggccacgttcttattttcccttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtcttccagacgtttcttcaacactggtagctcaggggccacgttcttattttcccttga 403
Query: 121 agcagctcccgacttacagcacgtgagctcttcttatttcagtgtttgctataggagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agcagctcccgacttacagcacgtgagctcttcttatttcagtgtttgctataggagaaa 343
Query: 181 tgttccccccaccctccaacccactgagtattcaggtca------ttatatccaatgtcg 234
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 342 tgttccccccaccctccaacccactgagtattcaggtcattatacttatatccaatgtcg 283
Query: 235 ctttcaagcaagacggagtgtttttaaaagcactaacttgcctctcttatggaattatct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 282 ctttcaagcaagacggagtgtttttaaaagcactaacttgcctctcttatggaatcatct 223
Query: 295 ctggcttcatctcttttctgag--------t----tgtcaagaagcactccacagaacta 342
|||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 222 ctggcttcatctcttttctgaggctttgcttcaggtgtcaagaagcactccacagaacta 163
Query: 343 agttttccaacttgtttcctttgcttgctggcttcgatagcttaccgcttgcttccccac 402
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 162 agttttccaacttgtttcctttgcttgctggcttcgatagtttaccgcttgcttccccac 103
Query: 403 tacagcaggtcacaatttaactgagttttcgtaaaggaaaaatcagagctgtgggcttcc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tacagcaggtcacaatttaactgagttttcgtaaaggaaaaatcagagctgtgggcttcc 43
Query: 463 catttaaacaaagatccgcagattacaatggctcaggaaaaa 504
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 42 catttaaacacagatccgcagattacaatggctcaggaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 938
Length adjustment: 10
Effective length of query: 522
Effective length of database: 928
Effective search space: 484416
Effective search space used: 484416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_i21.g1 MSMg01no409_i21.g1 CHROMAT_FILE:
MSMg01no409_i21.g1 PHD_FILE: MSMg01no409_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:57 2005
(524 letters)
>mm_chr18_53086301_53087225
Length = 925
Score = 961 bits (497), Expect = 0.0
Identities = 518/525 (98%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 1 agtgtctgaaagagtctggca-tattttcacccagaggcactgggtaagtagaaccatag 59
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtctgaaagagtctggctgtattttcacccagaggcactgggtaagtagaaccatag 260
Query: 60 caaaatggcaagggtatgacaggaggaatcacctatccctgtcactgtcaccatctagga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaatggcaagggtatgacaggaggaatcacctatccctgtcactgtcaccatctagga 320
Query: 120 atgccagcccaaggttgccagactctatttgtcataacagcataagaaaaaaagatgtca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgccagcccaaggttgccagactctatttgtcataacagcataagaaaaaaagatgtca 380
Query: 180 tctgtattaatctcccaattcgttctgcccatggcttaatatctgggctacctatgaagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtattaatctcccaattcgttctgcccatggcttaatatctgggctacctatgaagg 440
Query: 240 ccagatgcccagttctatgagtttattcggctcacagaccaagcagtttagtgtgtatga 299
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagatgcccaggcctatgagtttattcggctcacagaccaagcagtttagtgtgtatga 500
Query: 300 gggagagggaaccttatcaagaaatacaggacaaacatttggacccttatctgactccat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagagggaaccttatcaagaaatacaggacaaacatttggacccttatctgactccat 560
Query: 360 gtaactattttgtagaatttactgaagaaccatccaccggcaaacaagaatgatctcaag 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaactattttgtagaatttactgcagaaccatccaccggcaaacaagaatgatctcaag 620
Query: 420 gaaataaatggaaattttgccaagtaaatgaatttagtaaaccatgaaaaatatgtaggc 479
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 621 gaaataaatggaaattttgccaagtaaatgaatttaataaaccgtgaaaaatatgtaggc 680
Query: 480 tcaggccagtaagtcaaagtaagatgaaatattcccttgagcgaa 524
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaggccagtaagtcaaagtaagatgaaatattcccttgagcgaa 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
