BAC Information

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BAC

Clone NameMSMg01-409J07
Chromosome18 (Build37)
Map Location 59,815,874 - 59,816,229
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409J07.T7 (MSMg01no409_j07.b1)MSMg01-409J07.TJ (MSMg01no409_j07.g1)
ACCAG507031AG507032
length790793
length of high quality
(start - end)
408 (75 - 482)358 (58 - 415)
definitionCHROMAT_FILE: MSMg01no409_j07.b1 PHD_FILE: MSMg01no409_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:59 2005CHROMAT_FILE: MSMg01no409_j07.g1 PHD_FILE: MSMg01no409_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATCAGATCTCTCAGGAACTCCTAATAACAACTTTCTTC
AAACTATTCCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTA
TGAAGCCACAATTACACTAATAGTTAAACCACACAAAGACCCAACAAAGA
AATAGAACTTCAGACCAATTTCCCTTATAAATATCAATGCAAAAATACTC
AATAAAATTCTGGCAAGCCAAATCCAAGAACACATCAAAACCATTCACCA
CTATCAAGTAGGCTTCATCGAAGGTATACAGGGATGGTTCAATATAGGAA
AATCCATGAACATAAATTACTATATAAACAAACTCAAAGAAAAAAAATCA
CATGATCATCTCATTAGATGCTGAAAAGCATTTGTCAAAATTCTTTAAAA
GTCTTGGAAAGACCAGGAACTCAAGGCCCATACACACACATAACAAAAAC
AATATATACCATATCATAAGCCAATATGAATTTCAATGGAGAGACACTTG
AAGCATTCCCCCTAAAATCAGGGACAAGACAGGGATGCCCACCCCTCTCC
ATACCTATTCAATTAATAGGTACCCTACATTCCTAGCACGAGCTATATTG
CCCACAATCGGTGGTTTCTGCGGTATTAAACTTTTATTTGGCGCACGCGC
ACAGGGGGCGGTATTCCCACGAATGGGCACCTCTATATCCCCCGGACCCC
TTTATATTCTTTCTCACAAGGTCTCCCTACCGGTGAGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTAAATGGTCCACATCAAAGAAGAGAAAGAATGAGGGGGAGTT
GCGGAGTCTGTTAATTAGCACAGAGTCTGTTAATTGAACTTGATGTGTAA
GGACCAACAACACAGGCTGGGGAAGCAATCATGGTCCTCACATACCTGTG
TTTTAGTTTCACACAGACTGCGTAAGATGTACCTTTAGCTTGAATTATAC
ATGGAAACTGCCTGGCTAATAAGGAACTTACCTCACATAATTTATGAAAT
ACCTCAGCAGTTACTTCCTCTCACCTACAAAGAAGCAAAAATCATTGGAG
ACCAGTTTACACAACTGTCCTAGACTTGATTTTGTTTCTACACTCATAGG
TTGTTGCCTATTATCATATAAACCTTTATACAAACCTACTAACTAACTTA
ACCAATACTATATATAACCCTATTTATTTTCTTTGTCTCTTATGTCAGAG
ATATTATATATCACCTCTAGGAACGTGTCTTGGTACCCTATAATTTTCTC
CTTATTTGAATGGTTTGTGTCAATATTTTTTCATTTTTATTTAATCCATT
TTTCTTCAGTTTCTTACATTTTGCTAATACTTTATTTTTTTCAACGTTCT
TTCTAATTTTCTTTATAATTTTCTCACCATCTTTTATATTATTATCTCAT
CTTTTTCACTCTGTCCTCTCATTTCTATTTTTTTACATATTTATTTTGTC
TTTTATCCTTCTTTTCTTTTCGTTCTTCCTTATCATTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_j07.g1 MSMg01no409_j07.g1 CHROMAT_FILE:
MSMg01no409_j07.g1 PHD_FILE: MSMg01no409_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:00 2005
         (358 letters)



>mm_chr18_59815674_59816431
          Length = 758

 Score =  688 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaatggtccacatcaaagaagagaaagaatgagggggagttgcggagtctgttaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctaaatggtccacatcaaagaagagaaagaatgagggggagttgcggagtctgttaatta 497

                                                                       
Query: 61  gcacagagtctgttaattgaacttgatgtgtaaggaccaacaacacaggctggggaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcacagagtctgttaattgaacttgatgtgtaaggaccaacaacacaggctggggaagca 437

                                                                       
Query: 121 atcatggtcctcacatacctgtgttttagtttcacacagactgcgtaagatgtaccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atcatggtcctcacatacctgtgttttagtttcacacagactgcgtaagatgtaccttta 377

                                                                       
Query: 181 gcttgaattatacatggaaactgcctggctaataaggaacttacctcacataatttatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcttgaattatacatggaaactgcctggctaataaggaacttacctcacataatttatga 317

                                                                       
Query: 241 aatacctcagcagttacttcctctcacctacaaagaagcaaaaatcattggagaccagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aatacctcagcagttacttcctctcacctacaaagaagcaaaaatcattggagaccagtt 257

                                                                   
Query: 301 tacacaactgtcctagacttgattttgtttctacactcataggttgttgcctatta 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tacacaactgtcctagacttgattttgtttctacactcataggttgttgcctatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)