BAC Information

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BAC

Clone NameMSMg01-409J18
Chromosome18 (Build37)
Map Location 42,252,067 - 42,252,434
singlet/doubletsinglet
Overlap geneSh3rf2
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851
Downstream geneEG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409J18.T7 (MSMg01no409_j18.b1)MSMg01-409J18.TJ (MSMg01no409_j18.g1)
ACCAG507053AG507054
length800793
length of high quality
(start - end)
486 (49 - 534)366 (76 - 441)
definitionCHROMAT_FILE: MSMg01no409_j18.b1 PHD_FILE: MSMg01no409_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:02 2005CHROMAT_FILE: MSMg01no409_j18.g1 PHD_FILE: MSMg01no409_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCTTTTGTTTTCCTCTGTACCCCATTTTTTAATAGGGTTATTTGA
TTTTCTGGAGTCCATCTTCTTGAGTTCTTTATATATATTAGGTATTAGTC
CCCTATCTGATCAATCAAAGAAAATGCAAAATGCAAAAGGATCCTAACTC
AAAACATCCAGGAAATCCAGGACACAATAAGAAGACCAAACCTAAGGATA
ATAGGTATAGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGTAAATAT
CTTCAACAAAATTATAGAAGAAAACTTCTTTTACCTAAAGAAAGAGATGC
CCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAA
AGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAA
AGATAGAATATTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAG
GCAAGCCTATTAGAATTACACCAGACTTCTCACCAGAGACTTATGAAAGC
CAGAAGATCCTGGACAGATGTTATACAGACCCTAAGAGAAACAAATGCCA
GCCCAGGCTACTATACTCAGCAAAAATCTCTATTACCATAAATGGAGAAA
CCCAAGTATTGGCTGGAAAAAACCAATTTTCTCCAAAATCTTTTTTCCCG
AATCTAGCCCTTTCTCCGGTAAAATAAAGGGGCAAATACCCACCCCCAGG
GTGGGGTTTTCTCTCCCTACAATAAAGTAGGAAGGTGTTCCTTTTATACA

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTGTCCTTTGGGGAAAAACATTT
ATTGGGCTAGATACTGCGTTAGGCATTAGGGCCCTAGAGACATAAAGCTT
TCAGTTCCTGCTAAGTGTGCAGTAGAAGGGTCAGGTGTCAACTGACAATG
CAACGTGGAGAGTGTCATTAAAGCTAGTGGGATGATCCTTAATTCAGGCT
GTCTATTTAAAGATGTGACGTTTAAGCTGAGACCTGAACAACACGTAGCA
GCTGAGCAGTAGAGGAAGGGAAGGAGGAGACTATTCTGGAAGACACTTAA
GAGATAAGAAATTATGAGGCACAAGTAGCTTCAAAAAGGCTCTAAGGGAC
TGCAGTAGTCAGCATGAACAAGATGCCCAGAGATGGATACAGACCAGGAC
CTGCAGTGGTCAGTGTGAGAGGAAGATGCCCAGAGATAGATATTGTAGAG
AAGAAATTCCTTACTGTCTTCCGAGGCATTTCTTGTCGCCTCATTGTCCT
CCTTTTCTTCTGCTATCAAACAGGCTTAATGCTAGTTATGCATTGTTCGT
ATTCAACACCCCCCGACCTCTATCATTCTTTTTCCGAAACTATTGTTTTC
CTTATTTTTCCCTCTCCTCAACTTCTTTTATTCTTCTACCTCCATTATTT
TTTATTCCCTATACCCTTCACCCACTTTCTATCTTTTATCCCTTTTTACT
TTTCACTTCTTATCTTTTCCTTATTCTCATTACTATTCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_j18.g1 MSMg01no409_j18.g1 CHROMAT_FILE:
MSMg01no409_j18.g1 PHD_FILE: MSMg01no409_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:02 2005
         (366 letters)



>mm_chr18_42251867_42252632
          Length = 766

 Score =  669 bits (346), Expect = 0.0
 Identities = 362/368 (98%), Gaps = 2/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgtcctttggggaaaaacatttattgggctagatactgcgttaggcattagggccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgtcctttggggaaaaacatttattgggctagatactgcgttaggcattagggccct 260

                                                                       
Query: 61  agagacataaagctttcagttcctgctaagtgtgcagtagaagggtcaggtgtcaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagacataaagctttcagttcctgctaagtgtgcagtagaagggtcaggtgtcaactga 320

                                                                       
Query: 121 caatgcaacgtggagagtgtcattaaagctagtgggatgatccttaattcaggctgtcta 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgcaaagtggagagtgtcattaaagctagtgggatgatccttaattcaggctgtcta 380

                                                                       
Query: 181 tttaaagatgtgacgtttaagctgagacctgaacaacacgtagcagctgagcagtagagg 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tttaaagatgtgacgtttaagctgagacctgaacaacacggagcagctgagcagtagagg 440

                                                                       
Query: 241 aagggaaggaggagactattctggaagacacttaagagataagaaattatgaggcacaag 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 aagggaaggaggagactattctggaagacatttaagagataagaaattatgaggcacaag 500

                                                                       
Query: 301 tagcttcaaaaag--gctctaagggactgcagtagtcagcatgaacaagatgcccagaga 358
           |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tagcttcaaaaagaagctctaagggactgcagtagtcagcatgaagaagatgcccagaga 560

                   
Query: 359 tggataca 366
           ||||||||
Sbjct: 561 tggataca 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)