BAC Information

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BAC

Clone NameMSMg01-409L03
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409L03.T7 (MSMg01no409_l03.b1)MSMg01-409L03.TJ (MSMg01no409_l03.g1)
ACCAG507119AG507120
length791788
length of high quality
(start - end)
494 (46 - 539)442 (76 - 517)
definitionCHROMAT_FILE: MSMg01no409_l03.b1 PHD_FILE: MSMg01no409_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:09 2005CHROMAT_FILE: MSMg01no409_l03.g1 PHD_FILE: MSMg01no409_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTAGGAACATGTCCTTGTTGTATACTTATCCTGCTCCCATTAAT
TGGGGTACTCTACTGTGGCAAGGGTACTTGCCATGTCTTAACTTGAAAAC
CAGAAAGTCAGTTGTGCATGTACAAGTCTCTTTCTTCCAAGTAAGATGTC
AGTTCCCAGGGAGGCCTCGAGAACTTATACTTTACTCACTCACACCCTAC
TCAAAATAGAAGTCTGGTTCGAAGTAGTCTCTGCACTGAATCGGTGGTGC
GGGTGTCTCTCTTTTGTTGGGGTGCGGGGGTCCGTCCCCAGGGCAGCTTC
TAAGAGCAAATGCCAGAAAAGTGTATACATGGGTTTGTGCAGGAAATGCT
GCTGGGTGGTCAGTTTGGGTCCAAGCCTATTGCAGATAACTATAGAACAA
AGGAAGCTTCTATTCTGATTGGTTTCCGAGGACACATCCAACAAGAATAT
GTAGTCAATTCTGGCAATAATGGCAGAAACAAGCTATGAGAAAGTGTCCT
TATAATAGCAGTTAACAGCACAAAATGCGAGGCTAGCCAGGTAAAAGGTT
ACCTAGGTCTTATCTAATCCGAATTAAGGCCTTCTATTCCATCCTAGGCT
TAAAATTTTTACCCTATACCTTAAATGCCTTCCAGTTTTTCCTCCTGACT
CTTCGCATATGGCTGTTCCTATTACTTGAAAATTTTTCTCCGCCACTATC
TTTTTATACAATTAATCAAACCACCTGAAATTCTGAAAATA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTC
CACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCAT
ACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAA
AGAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGT
CAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTT
GGAATTTCTACTTCATGTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCT
GTATAGCCCTGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGNA
ACTTGCAATCTAGTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAA
TTCTTTTTCCTTTTTATATTTTATTTTATTTTATTNNANTTTATTTTATT
TTATTTTATTTTATTTTANTTTAATNNAATATATTTAANNNNATTAATAT
TTNNNAATTTATATTNTTTCTCTATTTTTNNNTNTTTTTTTTTTTTTTCT
NCTTCCTTTTCTATCATTTTNAACTCTTATCCGACTATTCNNNNTCTTTT
CTACTTTCCCCTCTTCTCTCTTNNTTTTTTTATTACTTTTTTTTTTCTTT
TTTCTCATCTTTCCGTNTCTCATACCTCTTATTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_l03.g1 MSMg01no409_l03.g1 CHROMAT_FILE:
MSMg01no409_l03.g1 PHD_FILE: MSMg01no409_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:09 2005
         (442 letters)



>mm_chr18_40467476_40468316
          Length = 841

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 841
Length adjustment: 9
Effective length of query: 433
Effective length of database: 832
Effective search space:   360256
Effective search space used:   360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)