BAC Information

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BAC

Clone NameMSMg01-410F07
Chromosome18 (Build37)
Map Location 51,269,683 - 51,269,941
singlet/doubletsinglet
Overlap genenone
Upstream geneHsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
Downstream genePrr16, EG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410F07.T7 (MSMg01no410_f07.b1)MSMg01-410F07.TJ (MSMg01no410_f07.g1)
ACCAG507604AG507605
length7351,764
length of high quality
(start - end)
255 (333 - 587)---
definitionCHROMAT_FILE: MSMg01no410_f07.b1 PHD_FILE: MSMg01no410_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:02 2005CHROMAT_FILE: MSMg01no410_f07.g1 PHD_FILE: MSMg01no410_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCGTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATAGTTTCCTAAAGTAAGGTTTGAAATTTAAACTAA
ATAGATAAAATTTTCAGACTTTATTAACGTTATATTTGTACTTAGGAAAG
GAGTATTATGTTTGTAGTTACCAATCGCCCAATTTGACCATTGAAACAGC
TGAAATATACTTTGAAAAATGCTGTTACAGAATGGTAGGTTTTAATGATA
GTTTTAAGAAATCAAGTAAATCTAGAATGTATCCAAATCCTGGAATAGTA
CAGGTCCACATTTCTGGATCTATCTTTATTATGTATCTATCAAAACAAAG
ACAAAACCATATCATACTGGTGAGCATTTACCCAATAATTCACAGAATTA
TCAGTTTTGATTCTCAGTATATTTTTTTTTCAAAATAAGTATTAAGTCAG
CACACTCAAATAAAGCAGTTAATGCTAGTGGCGTTGTGCCCTTAAGATCA
CAAAATTAGCAACAGAATATCCATTTTAAATGCAAAATTCTCCAGCTTCC
AGTCCAGCACTTCCTTTGCAGATAATAAATGCAAAGGACAGCTCTTCTAT
AGTTCCTTAAGATGAAGAAAAGTATATGTTGAAGAAATTTCCTCTGATAT
ATACGTTCTACTTTTCTTGAGAATTTCTTTCCCCAGAACGACCTAAACCT
TTATTTGGCGCTTTTTAACCCCTGAAATTTATGGG
NAAAANNGNNNNTACCAAAAGAACTAAGNTGNNNGNTAAGGNCCCNATGG
GNCGGGNCCCGNCCCCTGGGTCCCTGCTCCATAACAATNTNTAAGGGNTN
GAAACATCNTAAATAAGNAAAAGGGTAACNTCCNGTCAANGNAAATNTNC
NTNCNCAAGAAAGNTNTNTNGNAATNCNTNTCCNCNTNCNTNGNTNGNTN
GNTNGNTNGNTNGNTNGNTNGNTNGNTAGNTNGNTNGNTNGNTNGNTNGN
TNGNTNGNTNGNTNGNTNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNGNNGNNNNNNNN
NNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNN
NNNNGNNNNNNTNTTTTNTTTGTNNTGGTGNGNNGGTGTGTGTTTNNGNG
TGTNNTGTTGGNTGTGNGNTTNGTTNTTTGGTGTTGTTGTTTGTTGTNGN
GTTTGGGTGTGTTNNTTGTTNGNGTGGTTGGTNTGTGNTNGGNGGNTNNG
GNNNGTNGTTTTTGTTGTGTTGTTTTGTGGTNTTTGGTNNGGGGNNGNGN
GNGTNGNNGNNNNTNNGNNGGNGNNGNNGNNGTTTNGGNGGNNNGGNGTG
GGTTTTNTGTGTGTGTTTTTGTTGTGTTNTNGTTTNGTGTNTGGTNGTTT
GTGGGTTGGNTGTGGTGTGTGTTTTGTGTGTGTTGTGGTGTGTTGTGTGT
TTNGTTTTTNTTTTGNTTTNTTTTGTTGTNGTNTNGNNNNNNNNGNGTTT
TTTTGNNNTNGNTTGGTTGTGGTTGTTTGTTGTGTGTGTTTTGTGTTTGN
NTNGNGTTTGTNGNGNTNTNGTGTGNGTGTNGGTGGTTTTTTTTTTTGTG
TTNGNTTTTTGGTGGNTNNGTGTTNGGTTGTTTGGTTNNTTTNTNGNGTT
TTGNNGTNNTTTNGTGTNTTTTTNTGGTTNNTNNGGNNTGTGNGGTTNNG
TGTTTTNGNTGTGTGTTTTTTNGTGTGTGTGTTTGNNGGNNGGNGGNGTT
TTTTGGTTNGTTTTNGTCGNNNNGNTNTNGNTGTTNNGTCCTNCCTTCCT
NNGTNNTGTCTNGTTNNTNTCTNNTNGCCCTGNGTNGNGTNGTNGTNNTT
TNNTGTGTGTTGTTNTGTTTTNNGNGTNNTNTGCGNTNGTCCCTNTGNTT
NCCCCGGCCCCCTCCCCGTCNTNTNTCTCGTNTNTGNTTCCTCTCTNNTN
TCCCCTNTCTNTCTCCCGTCCGCCGCCCGCTNTCCGTNCGTNTCCTNTCC
GCCGTGTGCCTCTCCCGTTTCGGTNNTTCGCTGNTCTTCCTGTCCCCCTN
NTCNGCCCGCCCCTGCCCCGCCNNTNNTNCCGCCGCGCGCCCCNTNNNTN
TCTGCCGCCCCCTTCNCCCTCTCTCCTCCGCCCTNNNTNGCTNCCCCCGN
TTTNCCCGCGCTTNCTCGCCGCCNCNTGCTGCCTCGTNTNTCGNNTNNNT
NGTCCCTCCGCCGNCCCCTCCCTCCCTNTCNTCCCCTCCGCCCCCTGCCN
CCGNTCNTNTTNTCCTCCCCCCCCCCCNTCCTGNCCCGTNCNTCCCCGCC
CCCTCCTGNTNGTCCTNGTNGCTCCCNGTCNNGCCCCCCCCTCNCTNNTC
TCTGNCCCTCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_f07.b1 MSMg01no410_f07.b1 CHROMAT_FILE:
MSMg01no410_f07.b1 PHD_FILE: MSMg01no410_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:02 2005
         (255 letters)



>mm_chr18_51269483_51270141
          Length = 659

 Score =  439 bits (227), Expect = e-128
 Identities = 250/259 (96%), Gaps = 4/259 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatctatcaaaacaaagacaaaa-ccatatcatactggtgagcatttacccaataattc 59
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 201 gtatctatcaaaacaaagacaaaaaccatatcatactggttagcatttacccaataattc 260

                                                                       
Query: 60  acagaattatcagttttgattctcagtata---tttttttttcaaaataagtattaagtc 116
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 261 acagaattatcagttttgattctcagtatactttttttttttcaaaataagtattaagtc 320

                                                                       
Query: 117 agcacactcaaataaagcagttaatgctagtggcgttgtgcccttaagatcacaaaatta 176
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacactcaaataaagcagttaatgctagtggcgttgtgcccttaagatcacaaaatta 380

                                                                       
Query: 177 gcaacagaatatccattttaaatgcaaaattctccagcttccagtccagcacttcctttg 236
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaacagaatatccattttaaacacaaaattctccagcttccagtccagcacttcctttg 440

                              
Query: 237 cagataataaatgcaaagg 255
           ||||||| |||||||||||
Sbjct: 441 cagataacaaatgcaaagg 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 659
Length adjustment: 9
Effective length of query: 246
Effective length of database: 650
Effective search space:   159900
Effective search space used:   159900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)