BAC Information

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BAC

Clone NameMSMg01-410J04
Chromosome18 (Build37)
Map Location 72,391,637 - 72,605,991
singlet/doubletdoublet
Overlap geneDcc, LOC629684
Upstream genenone
Downstream geneLOC100043411, LOC100042955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410J04.T7 (MSMg01no410_j04.b1)MSMg01-410J04.TJ (MSMg01no410_j04.g1)
ACCAG507790AG507791
length734736
length of high quality
(start - end)		567 (54 - 620)483 (85 - 567)
definitionCHROMAT_FILE: MSMg01no410_j04.b1 PHD_FILE: MSMg01no410_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:21 2005CHROMAT_FILE: MSMg01no410_j04.g1 PHD_FILE: MSMg01no410_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,391,637 - 72,392,199)(72,605,510 - 72,605,991)
sequence
NNNNTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATGAACTTACATTGAGAACATTATGTTTGAAGAGAA
AAGAACTAAGAACCTTAGGAGAATTGGAGAATGAAATAGAGAAGACACCA
TTGCTTTCAATGAGCCACAAATGTAGCATAGTTAACCAGCTGAAGCATAA
AAAATATAGAGTTACCCATGAAATACTAATCATTTAGTAGAAATTGAAAG
TATAATTACTAGTAACAACCTAATTCAAACTTGGTTGGACTATAACAGCG
AGTTGTAGAGACTAAGGCTGTTAAGACATTCTTCAACAAGTTTTAAAATT
CAAAAGCTTATTAGATTCGCATTCCTAGCTATTTAAATATTGAAGATTTA
TATGGCCCATAGTTATTCTTTACTAATGAATATATAATATGTCCCATCAA
GTATGGATCACTGTCTCAAAAGAAACAAACCTCCTTTGATTTCTCTGCTA
AGTACTCAGTACTTAATTTGTTGCTTGGAGAATAATCCATTTGGAGAATA
CTAAGCCTATCCTATCCCTGCATTTAGCTCCAATACTGCAATTTGCCCAT
GATGAAAGGCACTGAATGTGAACTGTTGTGGACAAAATTCTACCATCAGT
ACATACGAGTTGACTTTGAGACTTGAAATCAATTCTTAGCCCTTTTAAAT
CTCTATCTCCCTTCTGGTAGAAGAAGACTGGACN

NAAAACCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATCCATAATAGAAA
ACACTCATACATGGAAGGAGGTGTTTGTGCCCTTTTGACCACCTTTATTC
CAGTGGGATTCTAGAGTTGAGGTTCTAATTGTTGTCAGTGAGATTTATAA
GTTTTTCATTCTCTTATCAGATTATAATTTTACAAGACACATCTTCCTCA
GAAAATAGGGCTGTTCACTCAAATCCTGATTTCAAGCCAGTGGCTTTTCC
ATTTTCTTAGTTGCTTATATTTTAATCATTACACGTATGTATATAATGCA
TTGTGGTAGTATTCATATTCATCATTACTGTCTCTACCCTGTATAGTGTT
ACTCATTCCTTTCTTCATACTACTTATCACAATTGTAATGTGCATTGTTA
GGTACAGTAAACAGCAATTCGTAAAGCTCCTCTGAAATTCTCCAACTCTT
CCAATCCATTGATTTCCTTCGTCAGTGACGCTCCCTGGCCTTTGAGGGAG
TTGCAGTGGTGGGGGACGTGGGNTATATGTTCGNNTTTTCNTNNTTTNTT
CCTCCCCCCTTCTTTCCCTTCTCCCTTCTCCCCCTGGGGTTTTCCCCCTC
TCTCCTCCTTCCTCCTCTTGTGCCTTCCTCTCCTCCCGCCTCGTTCCCCT
TTTCTTCCTTTTCCCTTTCCTTTCCCCCTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_j04.b1 MSMg01no410_j04.b1 CHROMAT_FILE:
MSMg01no410_j04.b1 PHD_FILE: MSMg01no410_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:21 2005
         (567 letters)



>mm_chr18_72391433_72392399
          Length = 967

 Score = 1019 bits (527), Expect = 0.0
 Identities = 554/563 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgaacttacattgagaacattatgtttgaagagaaaagaactaagaacctta 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgaacatatattgagaacattatgtttgaagagaaaagaactaagaacctta 264

                                                                       
Query: 65  ggagaattggagaatgaaatagagaagacaccattgctttcaatgagccacaaatgtagc 124
           ||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 265 ggagaattggagaattaaatagagaagacaccattgctttcaacaagccacaaatgtagc 324

                                                                       
Query: 125 atagttaaccagctgaagcataaaaaatatagagttacccatgaaatactaatcatttag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagttaaccagctgaagcataaaaaatatagagttacccatgaaatactaatcatttag 384

                                                                       
Query: 185 tagaaattgaaagtataattactagtaacaacctaattcaaacttggttggactataaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaattgaaagtataattactagtaacaacctaattcaaacttggttggactataaca 444

                                                                       
Query: 245 gcgagttgtagagactaaggctgttaagacattcttcaacaagttttaaaattcaaaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 gcgagttgtagagactaaggctgttaagacattcttcaacaagttttaaaattcaaaggc 504

                                                                       
Query: 305 ttattagattcgcattcctagctatttaaatattgaagatttatatggcccatagttatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttattagattcgcattcctagctatttaaatattgaagatttatatggcccatagttatt 564

                                                                       
Query: 365 ctttactaatgaatatataatatgtcccatcaagtatggatcactgtctcaaaagaaaca 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 ctttactaatgaatatataatatgtcccatcaagtatggattactgtctcaaaagaaaca 624

                                                                       
Query: 425 aacctcctttgatttctctgctaagtactcagtacttaatttgttgcttggagaataatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacctcctttgatttctctgctaagtactcagtacttaatttgttgcttggagaataatc 684

                                                                       
Query: 485 catttggagaatactaagcctatcctatccctgcatttagctccaatactgcaatttgcc 544
           |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 685 catttggagaatactaagcctatcctatccctacatttagcttcaatactgcaatttgcc 744

                                  
Query: 545 catgatgaaaggcactgaatgtg 567
           |||||||||||||||||||||||
Sbjct: 745 catgatgaaaggcactgaatgtg 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_j04.g1 MSMg01no410_j04.g1 CHROMAT_FILE:
MSMg01no410_j04.g1 PHD_FILE: MSMg01no410_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:21 2005
         (483 letters)



>mm_chr18_72605310_72606192
          Length = 883

 Score =  924 bits (478), Expect = 0.0
 Identities = 481/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatccataatagaaaacactcatacatggaaggaggtgtttgtgcccttttgaccacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttatccataatagaaaacactcatacatggaaggaggtgtttgtgcccttttgaccacct 623

                                                                       
Query: 61  ttattccagtgggattctagagttgaggttctaattgttgtcagtgagatttataagttt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttattccagtgggagtctagagttgaggttctaattgttgtcagtgagatttataagttt 563

                                                                       
Query: 121 ttcattctcttatcagattataattttacaagacacatcttcctcagaaaatagggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcattctcttatcagattataattttacaagacacatcttcctcagaaaatagggctgt 503

                                                                       
Query: 181 tcactcaaatcctgatttcaagccagtggcttttccattttcttagttgcttatatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcactcaaatcctgatttcaagccagtggcttttccattttcttagttgcttatatttta 443

                                                                       
Query: 241 atcattacacgtatgtatataatgcattgtggtagtattcatattcatcattactgtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atcattacacgtatgtatataatgcattgtggtagtattcatattcatcattactgtctc 383

                                                                       
Query: 301 taccctgtatagtgttactcattcctttcttcatactacttatcacaattgtaatgtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taccctgtatagtgttactcattcctttcttcatactacttatcacaattgtaatgtgca 323

                                                                       
Query: 361 ttgttaggtacagtaaacagcaattcgtaaagctcctctgaaattctccaactcttccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgttaggtacagtaaacagcaattcgtaaagctcctctgaaattctccaactcttccaa 263

                                                                       
Query: 421 tccattgatttccttcgtcagtgacgctccctggcctttgagggagttgcagtggtgggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tccattgatttccttcgtcagtgacgctccctggcctttgagggagttgcagtggtgggg 203

             
Query: 481 ga 482
           ||
Sbjct: 202 ga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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