NACGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAGGATCC
GCGGAATTCCTCTGCTTTTCATTGAAGCATTCTCAGCACACTTCACGGTT
TGGGTTGAGCTCAGCTAAGTCACTAAAAATAACCAAGCTGCTGGGTTGGT
TCCCTCCATCGAGTTTGACTTCAGCCAGCTGGCATCTGACAACTATATCT
GTTATCAGAGAAAATAAAAATAAAAACACTCCTTCCTTCCTTCCTTCCAT
CCATCCATCTATCCTCCCTCCTTTCTTCAGCTGACATTACCTCACTTGGT
ATGGTAAGGTCTGGCACAGTGTTTTTTTATATCTTATCTAAAATAGGATT
TTCTGTGTACATTAAGAAGACAAATAGACTTGACTTTTTTTCCTTCCCGT
TTAATCTCTCGTGCACTGGAGAATGCAAACAGCTATAGAAAGAATCGATT
CCAATACTAACAATTTTGTTGTCTTTTGATTTTCAAAGACCTTGGTTAAT
GTCATACAAATCTGTAAAGAGAAAAGAGAAAAGGAGCGCATATTACTCAC
AAGGAGCTGTGTGGTATGACCAGGACACCTACAATAGGACATGCCCCCTA
CAACAGTAGTGATGTCAGAGGCTCACTTTGCTCTAGCTTGCTGGTGAATA
CTTGAAACACCCATAAGCCTTCTAACTTTTTTTAGCCACATGCCCTTTTT
AAAATTTTCTAACAAAGGTGCCGCACGAAATAAATTTCCCTTCGTTCCC

TGGCGGCCGCCTGGTTCTGACTGGAGGTGAACTATAGAAGGTTCGAAGAG
AAGTCATCATCTCCCACCTTCTCTAGGCTTGGCTGTGTCTCTCCCTTGGA
GTTCAGCCATGGCCTCTTAAAAATATCTTTCTCCTCTCCTCTCTCTCTCT
CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTC
TCTATCTCTCAAGTTCTACTACCCCCACCCGTGTGAGCGAGTGAGTGTGA
GTGTGACTGCTAGTTTGTCTCCAAAATAGCACTATAAAAAAATTTTTCTA
TTTAGTCAAGATGGATTACAATGGGAGATAAAGATATTTTTTACCCCATT
CATAGTCGTTAAAGATCCAAAATCATATTTTTATACAAAAGAGGCTGAAA
GATTTAGCCTCGTTACCTATGATCTTAGATAATGATGTAACGAGGCCGCG
GAGAGGGTATGTTGGCGAGATCTTATGGACAATAACAAAATGAGTATAGA
ATAAGATAAGAAGTAATGAAAACGAAGACGAGCGATTACTACCGCATTAT
ATTTCCCTACCCCTGTTAACAACATTATGTAGACCCCAATAATTCCCACC
AATTAAACGTCATTCTTTGACCCGATGGATTTTTTTACCTCACCCTTCCA
ATACATTATATTTATTCATTCGCCGAAAGGGATTGAATTTAACCTATGCT
ATTTAGCACTGATTTTAATTTATTAAATCCGGCCTTGTATTTTTN

Query= MSMg01no411_c08.b1 MSMg01no411_c08.b1 CHROMAT_FILE:
MSMg01no411_c08.b1 PHD_FILE: MSMg01no411_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:05 2005
         (482 letters)



>mm_chr18_54966998_54967878
          Length = 881

 Score =  818 bits (423), Expect = 0.0
 Identities = 467/497 (93%), Gaps = 28/497 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattctcagcacacttcacggtttgggttgagctcagctaagtcactaaaaataacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agcattctcagcacacttcacggtttgggttgagctcagctaagtcactaaaaataacca 250

                                                                       
Query: 61  agctgctg----------ggttggttccctccatcgagtttgacttcagccagctggcat 110
           ||||||||          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agctgctgccggcttctgggttggttccctccatcgagtttgacttcagccagctggcat 310

                                                                       
Query: 111 ctgacaactatatctgttatcagagaaaataaaaataaaaacactccttccttccttcct 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgacaactatatctgttatcagagaaaataaaaataaaaacactccttccttccttcct 370

                                                                       
Query: 171 tccatccatccatctatcctccctcctttcttcagctgacattacctcacttggtatggt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tccatccatccatctatcctccctcctttcttcagctgacattacctcacttggtatggt 430

                                                                       
Query: 231 aaggtctggcacagtgtttttttat-----atcttatctaaaataggattttctgtgtac 285
           ||||||||||||||||       ||     ||||||||||||||||||||||||||||||
Sbjct: 431 aaggtctggcacagtgc------atgaagaatcttatctaaaataggattttctgtgtac 484

                                                                       
Query: 286 attaagaagacaaatagacttgactttttttccttcccgtttaatctctcgtgcactgga 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attaagaagacaaatagacttgactttttttccttcccgtttaatctctcgtgcactgga 544

                                                                       
Query: 346 gaatgcaaacagctatagaaagaatcgattccaatactaacaattttgttgtcttttgat 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaatgcaaacagctatagaaagaatcgattccaatactaacaattttgttgtcttttgat 604

                                                                       
Query: 406 tttcaaagaccttggttaatgtcatacaaatctgtaaagagaaaagagaaaaggagcgca 465
           ||||||||||||||||||||||||||||||||||||||||||||||      || |||||
Sbjct: 605 tttcaaagaccttggttaatgtcatacaaatctgtaaagagaaaag------gg-gcgca 657

                            
Query: 466 tattactcacaaggagc 482
            ||||||||||||||||
Sbjct: 658 gattactcacaaggagc 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space:   411112
Effective search space used:   411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)