BAC Information

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BAC

Clone NameMSMg01-411J16
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,909
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411J16.T7 (MSMg01no411_j16.b1)MSMg01-411J16.TJ (MSMg01no411_j16.g1)
ACCAG508575AG508576
length746763
length of high quality
(start - end)
474 (68 - 541)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no411_j16.b1 PHD_FILE: MSMg01no411_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:42 2005CHROMAT_FILE: MSMg01no411_j16.g1 PHD_FILE: MSMg01no411_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:42 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCT
GGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAAT
GGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCA
CTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTG
TAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGT
TTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC
TGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAATCTAGTGG
GCTTATGTTTGATTCCTGCAATCTTTTTTTCTAATTCTTTTTCCTTTTTA
TATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTCATTTTATCT
TATTTTATTTTATTCCAATTTATTTTACTTTGCTTTTTTCTACACGTTTC
CCCTTTTCCCCCTTGCTGCCCATCCCTTTTTTTCTCCATCCTTTTTTCTT
TCTCTTCCCCTCTTTCCTCTTCTTTCTTCCTTCCCACTTGTTTACCCTTG
TTGTTTTTCCTTCTCCGCGCTTGCCTTTATTAATTCATCACTACTT
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTTCACAATGATAGGAAGAGCCGACA
TCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCC
AGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG
GTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAA
ATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTC
CTCCCTGAGCTCTTTCTTATGACACCTGCGTTACCGTTTGACAGGTGTAC
CGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCC
CGCCCGCACGCGCGTTACGGACTCTTGGCGCCAGAAGCGAGAGTCCCTCG
GGGCTCGCCCCCCTGCCTCACCGGGTCAGTGAACCAACCGACGAGAGTAT
TGTTATTTCACCGCCGGCCCTTTTTCCCGTTTTGCCCTTACCCCTACTTC
CCTCCGTTTTTCTTTCCCACTTCCTTTTCCCTCCTTTTCTCTCCCCCCCC
TTCTTTTTTACCCTGCCCTTCATTTCTTTTTGTGTCCCCTATGTCCTTCC
TTTTTTTTTTTTTTCCCTTTTATCCTTTATACGCCTTTTCCCCTCTATAT
TCCACCAAATATATCACCCACTAATATCTATTCCCCAAACCCTTATTTTT
ACCCTCCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_j16.b1 MSMg01no411_j16.b1 CHROMAT_FILE:
MSMg01no411_j16.b1 PHD_FILE: MSMg01no411_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:42 2005
         (474 letters)



>mm_chr18_40467476_40468348
          Length = 873

 Score =  346 bits (179), Expect = 2e-99
 Identities = 221/235 (94%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcctttcaggtccacatttgctctggctctggcaactgactgaaccaaacaattagg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 434 ctgtcctttcaggtccacctttgctctggctctggcaactgactgaaccaaacaa-tagg 376

                                                                       
Query: 61  ctcatacctagaactttggaaatggtaatggagttgataacacaccctaacagaaagagg 120
           |||||||||||| ||| | |||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 375 ctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaacagaaagagg 316

                                                                       
Query: 121 aatgctccactcactagtacactttcactagaagcctcaccctgtcagcagtttaggaat 180
           || |||||||||||||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct: 315 aaggctccactcactagaagactttcactagaagcctcgccctgccagcagtttaggaat 256

                                                                  
Query: 181 ttgtaaagccaatctggacaatatttaaatggtttggaatttctacttcatgttt 235
           ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 255 ttgtaaagccaatctggacaatatttacatgatttggaatttctacttcatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space:   400432
Effective search space used:   400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)