Query= MSMg01no411_j22.b1 MSMg01no411_j22.b1 CHROMAT_FILE:
MSMg01no411_j22.b1 PHD_FILE: MSMg01no411_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:43 2005
(564 letters)
>mm_chr18_61746447_61747408
Length = 962
Score = 1004 bits (519), Expect = 0.0
Identities = 550/561 (98%), Gaps = 4/561 (0%)
Strand = Plus / Plus
Query: 5 gaattcattagag-tttcctattatgtaatctcttattagatggtgtacacagaaattca 63
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagagctttc-tattatgtaatctcttattagatggtgtacacagaaattca 263
Query: 64 tgcatttactctagttagaatcatattctagcgctgcagtaatatctatttttcattgct 123
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 264 tgcatttactctagttagaatcatattctagtgctgcagtaatatct--ttttcattgct 321
Query: 124 tgttgggttttttaaatttagtgtgttcttggtatcaaagaagaagaattgggcatcctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgttgggttttttaaatttagtgtgttcttggtatcaaagaagaagaattgggcatcctc 381
Query: 184 ttgtgactgtaacaactctgatatagcttagggttgggtgctgaggctctgattgattat 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 382 ttgtgactgtaacaactctgatatagcttagggttgggtgctgaggccctgattgattat 441
Query: 244 agactgcttcctgggttattcagagtgaggctgtttagtggctttaatcagagatgcatg 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 agactgcttcctgggttattcagagtgaggctggggagtggctttaatcagagatgcatg 501
Query: 304 tactgccttgtgaaagtttaggttggtgattttccagataaaaacacagcatttccaagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tactgccttgtgaaagtttaggttggtgattttccagataaaaacacagcatttccaagt 561
Query: 364 gattattgtcctacatgtacctaatttggggagtacttgtaacatcttttttctgtttca 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gattattgtcctacttgtacctaatttggggagtacttgtaacatcttttttctgtttca 621
Query: 424 attttttaataggtttctaagcatgaattgtggaagagaagcagcagagcagatgattgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 622 attttttaataggtttctaagcatgaattgtggaagagaagcagcagagcagacgattgg 681
Query: 484 agcagcgtttgtttctccccaaacctagacattttagttcatatgtacactagccagtgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agcagcgtttgtttctccccaaacctagacattttagttcatatgtacactagccagtgg 741
Query: 544 ttgtggacaaccatttacttg 564
|||||||||||||||||||||
Sbjct: 742 ttgtggacaaccatttacttg 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 962
Length adjustment: 10
Effective length of query: 554
Effective length of database: 952
Effective search space: 527408
Effective search space used: 527408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_j22.g1 MSMg01no411_j22.g1 CHROMAT_FILE:
MSMg01no411_j22.g1 PHD_FILE: MSMg01no411_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:44 2005
(558 letters)
>mm_chr18_61922682_61923633
Length = 952
Score = 948 bits (490), Expect = 0.0
Identities = 535/554 (96%), Gaps = 10/554 (1%)
Strand = Plus / Minus
Query: 5 aaccactctaggacaaaaaccaagaacactaggggaatttattctaattaactttagacg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaccactctaggacaaaaaccaagaacactaggggaatttattctaattaactttagacg 679
Query: 65 tgaagattactctgttctgatttgctgagtcctggcacaactctgaggatttgcctgggc 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 678 tgaagattactctgttctgatttgctgagtcctggcacagctctgaggatttgcctgggc 619
Query: 125 taaagagatgacagacagacagacagactgcaaagctgggctcaggtagattggaccctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taaagagatgacagacagacagacagactgcaaagctgggctcaggtagattggaccctg 559
Query: 185 agatccagcgccttggaagcctggtgtgttttgttttgtacagctgaacaaagaggcagg 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agatccagcgccttggaagcttggtgtgttttgttttgtacagctgaacaaagaggcagg 499
Query: 245 gtttgtggtaggtggctgatggctgaacaaaggagacaggtgtcaactccatagggcgca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 gtttgtggtaggtggctgatggctgaacaaaggagacaggtgtcaactccatagggtgca 439
Query: 305 ctctccagatcacaaacgtgggcatatggggaaaaaaaaagtgctatgatggatgttttc 364
||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct: 438 ctctccagatcacaaacgtgggcatatgg--aaaaaaaa--tgctatgatgaatgttttc 383
Query: 365 tgcgcacgtggtcagtttcacacttggaccagaggaaggcattggcatccctctgagcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgcgcacgtggtcagtttcacacttggaccagaggaaggcattggcatccctctgagcct 323
Query: 425 tacccctgaggagcaaggagattatgcactttcccataggtctgaggctgttgccctgtc 484
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 322 tacccctgaggagcaaggagattatgcactttcccgtaggtctgaggctgttgc--tgtc 265
Query: 485 agcacacattccctcggcgtctccccatgctgacactcttgtctctcccacgaaaagctc 544
||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||
Sbjct: 264 agcacacattccctcggggtctccccgtgctgacacccttgtctctcccatgaaaagctc 205
Query: 545 atactacctggacc 558
||||||||||
Sbjct: 204 ----tacctggacc 195
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 952
Length adjustment: 10
Effective length of query: 548
Effective length of database: 942
Effective search space: 516216
Effective search space used: 516216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
