BAC Information

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BAC

Clone NameMSMg01-413D19
Chromosome18 (Build37)
Map Location 15,253,191 - 15,253,705
singlet/doubletsinglet
Overlap geneKctd1
Upstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, EG622268
Downstream geneLOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228, LOC100040202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413D19.T7 (MSMg01no413_d19.b1)MSMg01-413D19.TJ (MSMg01no413_d19.g1)
ACCAG509818AG509819
length742767
length of high quality
(start - end)
642 (34 - 675)513 (59 - 571)
definitionCHROMAT_FILE: MSMg01no413_d19.b1 PHD_FILE: MSMg01no413_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:51 2005CHROMAT_FILE: MSMg01no413_d19.g1 PHD_FILE: MSMg01no413_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATATGCAGAGAATGCGCGGAATTCCTTTCTTCTT
ACAATTTTCTTCTGTTTTTTTTTTTTCATTTTTTCTGATGCATAATGAGA
TCTGGGTGTACAGTCTGTAGTCCAACTTCCCAACAATGGTCAGCAGTAGC
TGTGAATAGAAGTCCAAGGATCCATGAGTTGCTCAGTCCCACAAGGCAAG
CAGGCAAAGAAGAGAGAGCCTGGAGCATCTTCTGGGTATATGCCCAGGAG
TGGTATTGCTGGGTCCTCAGGTAGTAAGTACTATGCCCAGTTTTCTGAGG
AACTGCCATATTGTATTTCCAGAGTGGTTGTACCAGCTTTCAATACTACA
AGAAATGGAGGTGTGTTCCTCTTTCTTCACATCCTGGTCAACATCTGCTG
TTTACCTGAGTTTTTGGTCTTAGCCATTCTGACTGCTGTGAAGTGGAATC
TCAGAGTTGTTTTGATTTCCATTTCCTGATGACTAAGGATTTTAAGGATT
TCTTTAGGTGCTTCTCATTCATTTGGTTTTCCTCAGTTGAGAATTCTTTG
TTTATCTCTGTATCCCATTTGTTAATAGATTATTTGGTTCTCTAGACTCT
AACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATCGAATGT
ATGGTTGGTAAAGATCTTTTCCCAAACTGTTGGTTGTGGTTTTTGTCCTA
CTGACAGGGTCCCTTGCTTTACAGAAGTTTTGTAATTTTATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTAGAATTTTCCACACAAAATTAAGCTCCACTACAGTAGCTAA
ATATTGATGGATTGGAAAAGGCTCCAAAGTGAATGGAAGGTCTGTCAAAG
CTCTCCCAATCTAGGGCTGAGGGTGTGGCCAAGGTGTTGAATGCTTACCA
GGTGTGTGTGAAGCCCTGGCTCAACCCTAGTGCCATAAAGAGGCCCATTT
AGCTAACCATGTTTGCTTACTTAATATTTTAATTAAAGCACTCCTATGGA
AATGTGAAAATTCTAAAATTTAAACTGTAGTTCATTATTTTTGATAGATT
TAAAAACTAGTGTCAGGAATGTTCTGTCCAAGGATAGCTGGTATTCTTGG
TTGCCAGTTTTGCTTAAAAATATCAGATGCACAGCAAAGCATAATTCAAT
AAAACATGACACTTTGAATAATAGTTGCAAACTGTAATTATTCCTCTGAC
TTGGACCATTGAGCTGAATAAAATCTCATTTTTCCCCTTCTTGCCATTGT
ACCTGGACATTTCTCAGTTAGATAATTCATTGCTGGATGTGAACCAGACA
TTTACCAGACTCTGTGAAAGTTAAAGCCCAAAGAAAACTGCAGATCATTG
TGTGAAGCCCGTCATTTACAGAAAAGAGGGACCCGGCGGGTAATTATGTT
GTGGAGGTCCCCCTTTATTAAACCAGAAAAAATTCTGTACGCCGGTTTTT
TATTGATCTTTGGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_d19.g1 MSMg01no413_d19.g1 CHROMAT_FILE:
MSMg01no413_d19.g1 PHD_FILE: MSMg01no413_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:51 2005
         (513 letters)



>mm_chr18_15252991_15253905
          Length = 915

 Score =  969 bits (501), Expect = 0.0
 Identities = 511/515 (99%), Gaps = 2/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaattttccacacaaaattaagctccactacagtagctaaatattgatggattggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tagaattttccacacaaaattaagctccactacagtagctaaatattgatggattggaaa 656

                                                                       
Query: 61  aggctccaaagtgaatggaaggtctgtcaaagctctcccaatctagggctgagggtgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aggctccaaagtgaatggaaggtctgtcaaagctctcccaatctagggctgagggtgtgg 596

                                                                       
Query: 121 ccaaggtgttgaatgcttaccaggtgtgtgtgaagccctggctcaaccctagtgccataa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 595 ccaaggtgttgaatgcttaccaggtgtgtgtgaagccctggctcaaccatagtgccataa 536

                                                                       
Query: 181 agaggcccatttagctaaccatgtttgcttacttaatattttaattaaagcactcctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agaggcccatttagctaaccatgtttgcttacttaatattttaattaaagcactcctatg 476

                                                                       
Query: 241 gaaatgtgaaaattctaaaatttaaactgtagttcattatttttgatagatttaaaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaaatgtgaaaattctaaaatttaaactgtagttcattatttttgatagatttaaaaact 416

                                                                       
Query: 301 agtgtcaggaatgttctgtccaaggatagctggtattcttggttgccagttttgcttaaa 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 415 agtgtcaggaatgttctgtccaaggatagctggtgttcttggttgccagttttgcttaaa 356

                                                                       
Query: 361 aatatcagatgcacagcaaagcataattcaataaaacatgacactttgaataatagttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatatcagatgcacagcaaagcataattcaataaaacatgacactttgaataatagttgc 296

                                                                       
Query: 421 aaac--tgtaattattcctctgacttggaccattgagctgaataaaatctcatttttccc 478
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaactatgtaattattcctctgacttggaccattgagctgaataaaatctcatttttccc 236

                                              
Query: 479 cttcttgccattgtacctggacatttctcagttag 513
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 cttcttgccattgtacctggacatttctcagttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 915
Length adjustment: 10
Effective length of query: 503
Effective length of database: 905
Effective search space:   455215
Effective search space used:   455215
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)