Query= MSMg01no413_g05.b1 MSMg01no413_g05.b1 CHROMAT_FILE:
MSMg01no413_g05.b1 PHD_FILE: MSMg01no413_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:03 2005
(276 letters)
>mm_chr18_10668647_10669323
Length = 677
Score = 503 bits (260), Expect = e-147
Identities = 269/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgactttc-agccagaaaataataacaagtagcttattcctgggcttatata 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaattcactgacttccaagccagaaaataataacaagtagcttattcctgggcttatata 417
Query: 64 gtgtgggagttaaatcgtgatatattagtacctagtaccctcagcagtatgtctatcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtgtgggagttaaatcgtgatatattagtacctagtaccctcagcagtatgtctatcaaa 357
Query: 124 atgcttcccaaaagctatgttattaaagctatagtctgacaaggactattgtaataagtt 183
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 356 atgcttcccaaaagctatgttattaaagctatagtctgacaaggtctattgtaataagtt 297
Query: 184 aatagtaataagtcccatattcaagtttgcttttcatcagtaaccagctatgtgatggag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aatagtaataagtcccatattcaagtttgcttttcatcagtaaccagctatgtgatggag 237
Query: 244 agtatgtcagttcacctctgtttctctatttg 275
||||||||||||||||||||||||||||||||
Sbjct: 236 agtatgtcagttcacctctgtttctctatttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no413_g05.g1 MSMg01no413_g05.g1 CHROMAT_FILE:
MSMg01no413_g05.g1 PHD_FILE: MSMg01no413_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:03 2005
(444 letters)
>mm_chr18_10500894_10501737
Length = 844
Score = 828 bits (428), Expect = 0.0
Identities = 440/444 (99%)
Strand = Plus / Plus
Query: 1 catgtctagaattctttgtctccagtccctgctctgtgggcttctttacactctcatgag 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtctagaattctttgtttccagtccctgctctgtgggcttctttacactctcatgag 260
Query: 61 tatatttgtctctttattgactgtatcagttttctttggctagcccatttatgctgtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatttgtctctttattgactgtatcagttttctttggctagcccatttatgctgtatt 320
Query: 121 aagcacatgatttaaagttgagaataaggcatttgccctcaagaatctctctctatctag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aagcacatgatttaaagttgagaataaggcatttgccctcaagaatctctctctatctcg 380
Query: 181 tgggctagtctgaccctttattagagtcagtaaacaactatcactacacactctggtaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggctagtctgaccctttattagagtcagtaaacaactatcactacacactctggtaac 440
Query: 241 accgtgactcattggaatatgagagctggcaaaggttcacagccaagagcttttaggagt 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgtgacacattggaatatgagagctggcaaaggttcacagccaagagcttttaggagt 500
Query: 301 cttggaagagagggcttaaacttcaaactgtgtgcagaagcctgctcaaagtggacctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggaagagagggcttaaacttcaaactgtgtgcagaagcctgctcaaagtggacctgt 560
Query: 361 tgaggaaaggtgacggtccagtcaaaggaagccaaacctcaaagaaaagaactaagctaa 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggaagggtgacggtccagtcaaaggaagccaaacctcaaagaaaagaactaagctaa 620
Query: 421 gccaactgacagacctcccttctg 444
||||||||||||||||||||||||
Sbjct: 621 gccaactgacagacctcccttctg 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
