BAC Information

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BAC

Clone NameMSMg01-413M22
Chromosome18 (Build37)
Map Location 70,626,742 - 70,627,262
singlet/doubletsinglet
Overlap gene4930503L19Rik
Upstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik
Downstream geneStard6, Poli, Mbd2, EG668032, Dcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413M22.T7 (MSMg01no413_m22.b1)MSMg01-413M22.TJ (MSMg01no413_m22.g1)
ACCAG510253AG510254
length760771
length of high quality
(start - end)		521 (57 - 577)506 (62 - 567)
definitionCHROMAT_FILE: MSMg01no413_m22.b1 PHD_FILE: MSMg01no413_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:36 2005CHROMAT_FILE: MSMg01no413_m22.g1 PHD_FILE: MSMg01no413_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCAATATCACTA
TTCCACTTGCAAAAGAAATGTTTATGCAAGTTCTAGATAATTTAACACCA
AAGCAAAATGAACATGCAGCATGTATTTTATAAAAGCACATGAAACACTG
TATCATCTTAGAGTAACAAATGAAAAATGCCTCTTAAGCAATATGAAAGC
TAGATCACACCACCATCAATTATTAAGTTATGTGGTGGAAAGCACATCTG
ATGTTGACATAATGGTTTATCATTTGGCACACTAAACAATGTCACTTACT
TACAAAGCCACAGGGACATTTTCCCACGTTCGTTCTGCTTCAAGTTTATC
TAAGGAGCAAGGACTGTCATCCTTTTCCACGGGTTTTGGTAAGTCTTTAG
CAGATTGTTTGAGATTCTTCTTAGCCTTCAGGATAAGCAACTCAATTTTG
TCACCTAATTTCAAAAACACTCTTTAAGAAAAAAAATAGAAATCTCAAAA
TACCTCAGTCAACAGGAAGTAAAACACTGGGAAAGTACACGTCTCTATCA
AATCAGGACAGTGGGATAATGTAAGCAAGGACACAGAGATAAAGACCTTA
ACAGCTTTAAAATACTAAAGATCATATGCATTCTACAAGTGTTATTACAT
CATAAAACTTCTACCGAGCATATCACATTTTAACATATCCTTTGCTTTTA
CAATAAAAACTTAAAACAAAATATTACCACCCAATGGGCTTTTGGAATTG
TCCTGGGAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CTTCAGAAAATTGGTATCTTAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATTTATCCAGAAGATGCCCCAACTGGTATGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGGCAAATGGATGGACCTGGAGGGCATTATCCTGAGTGAGGTAACACAT
TTCCCAAGGAACTCCCACAATATGTACTCACTGATAAGTGGATAATTATC
CCCAACCTTAGATTCCCCAGATATAAGGGACAATTTGCTAACCCCGCGAA
CCTCTGAAAAATGAAGAAGGGAGGGGGGAACCAATGCCCCTCTTTATAAT
GGGGAAAAAAACCCCCGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_m22.b1 MSMg01no413_m22.b1 CHROMAT_FILE:
MSMg01no413_m22.b1 PHD_FILE: MSMg01no413_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:36 2005
         (521 letters)



>mm_chr18_70626542_70627462
          Length = 921

 Score =  992 bits (513), Expect = 0.0
 Identities = 519/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcaaaagaaatgtttatgcaagttctagataatttaacaccaaagcaaaatgaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcaaaagaaatgtttatgcaagttctagataatttaacaccaaagcaaaatgaacatg 260

                                                                       
Query: 61  cagcatgtattttataaaagcacatgaaacactgtatcatcttagagtaacaaatgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcatgtattttataaaagcacatgaaacactgtatcatcttagagtaacaaatgaaaa 320

                                                                       
Query: 121 atgcctcttaagcaatatgaaagctagatcacaccaccatcaattattaagttatgtggt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 atgcctcttaagcaatatgaaagctagatcacaccaccattaattattaagttatgtggt 380

                                                                       
Query: 181 ggaaagcacatctgatgttgacataatggtttatcatttggcacactaaacaatgtcact 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ggaaagcacatctgatgttgacataatgctttatcatttggcacactaaacaatgtcact 440

                                                                       
Query: 241 tacttacaaagccacagggacattttcccacgttcgttctgcttcaagtttatctaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttacaaagccacagggacattttcccacgttcgttctgcttcaagtttatctaagga 500

                                                                       
Query: 301 gcaaggactgtcatccttttccacgggttttggtaagtctttagcagattgtttgagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaggactgtcatccttttccacgggttttggtaagtctttagcagattgtttgagatt 560

                                                                       
Query: 361 cttcttagccttcaggataagcaactcaattttgtcacctaatttcaaaaacactcttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcttagccttcaggataagcaactcaattttgtcacctaatttcaaaaacactcttta 620

                                                                       
Query: 421 agaaaaaaaatagaaatctcaaaatacctcagtcaacaggaagtaaaacactgggaaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaaaaaatagaaatctcaaaatacctcagtcaacaggaagtaaaacactgggaaagt 680

                                                    
Query: 481 acacgtctctatcaaatcaggacagtgggataatgtaagca 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacgtctctatcaaatcaggacagtgggataatgtaagca 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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