Query= MSMg01no413_n23.b1 MSMg01no413_n23.b1 CHROMAT_FILE:
MSMg01no413_n23.b1 PHD_FILE: MSMg01no413_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:42 2005
(589 letters)
>mm_chr18_29489461_29490449
Length = 989
Score = 1108 bits (573), Expect = 0.0
Identities = 579/581 (99%)
Strand = Plus / Plus
Query: 9 gaattcacctctaactaccccaactacttcttactacattctttcctatgctaaaatcac 68
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcacctctaacaaccccaactacttcttactacattctttcctatgctaaaatcac 268
Query: 69 ttgtcagagtgatttcttgcttaccaacatttgctcaagaaccctttgtgattccaactt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgtcagagtgatttcttgcttaccaacatttgctcaagaaccctttgtgattccaactt 328
Query: 129 ccctgtcataaattaatatagatctgatgaattatatatctcaattagtagagctttctt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccctgtcataaattaatatagatctgatgaattatatatctcaattagtagagctttctt 388
Query: 189 tgtatcttaagtgtcaaactctggatataaatgcatatatatgtatatatacatatacat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtatcttaagtgtcaaactctggatataaatgcatatatatgtatatatacatatacat 448
Query: 249 aatatatgtgagataacattggatttagagataggattgcacactttttcaggaattact 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatatatgtgagataacattggatttagagataggattgcacactttttcaggaattact 508
Query: 309 gagaacaaacatgctattttagtacgagttgatccgtaattaaagtctaagtctactttc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gagaacaaacatgctattttagtacgagttgatccgtaattaaagtctaagtctactttc 568
Query: 369 tattagaacttagaggtctacacttaacattggtcccaacattactagagactaattttt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tattagaacttagaggtctacacttaacattggtcccaacattactagagactaattttt 628
Query: 429 taattaggtattttcctcgtttacattttcaatgctatcccaaaggtcccccatacccac 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taattaggtattttcctcgtttacattttcaatgctatcccaaaggtcccccatacccac 688
Query: 489 ccccccaatcccctacccacccactccccctttttggccctggtgttcccctgtactggg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ccccccaatcccctacccacccactccccctttttggccctggtgttcccctgtactggg 748
Query: 549 gcatataaagtttgcaagtccaatgggcctctctttccagg 589
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 749 gcatataaagtttgcaagtccaatgggtctctctttccagg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_n23.g1 MSMg01no413_n23.g1 CHROMAT_FILE:
MSMg01no413_n23.g1 PHD_FILE: MSMg01no413_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:42 2005
(515 letters)
>mm_chr18_29650047_29650962
Length = 916
Score = 884 bits (457), Expect = 0.0
Identities = 502/517 (97%), Gaps = 3/517 (0%)
Strand = Plus / Minus
Query: 1 accatcctattatcttctgcttcttgtgtcctgaaggtagcaaatgaatactttttttag 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 716 accatcctattatcttctgcttattgtgtcctgaaggtagcaaatgaatactttttttag 657
Query: 61 tggatccccattcaacctgtactagatagcacttatacaaggactgcttcctaga-caat 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 656 tggatccccactcaacctgtactagatagcacttatacaaggactgcttcctagatgaat 597
Query: 120 accagagagaaaatcatacaagcaggacaattcccattcatgttcgtcccaagcagagaa 179
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 596 accagagagaaaatcgtacaagcgggacaattcccattcatgttcgtcccaagcagagaa 537
Query: 180 gcttgtgagtgcactgtataaaagacgaggtcattataaagaatcctatgactaatctag 239
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcttgtgagtgcactctacaaaagacgaggtcattataaagaatcctatgactaatctag 477
Query: 240 aatcctgttaagccaggtatttggtatatacttatttattttactctcaaaaatttattc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aatcctgttaagccaggtatttggtatatacttatttattttactctcaaaaatttattc 417
Query: 300 aatattttgtctttgtctcttgtgctaatactcttttgtttgtttgtttccttaacacat 359
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 416 aatattttgtgtttgtctcttgtgctaatactcttttgtttgtttgttttcttaacacat 357
Query: 360 gggtaaagaaaccaaagaataaattgctgtctttgggaagcacagcatatcagacaatct 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggtaaacaaaccaaagaataaattgctgtctttgggaagcacagcatatcagacaatct 297
Query: 420 agtcttcctgctattaagctcaacactgggactcacgctgctac-aaaatccttgctcat 478
|||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct: 296 agtcttcctgctgttaagctcaacactgggactcacgctgctacaaaaat-cttgttcat 238
Query: 479 ttcatagatatcatattttattaagtttactaaaggt 515
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttcatagatatcatattttattaagtttactaaaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
