Query= MSMg01no414_g20.b1 MSMg01no414_g20.b1 CHROMAT_FILE:
MSMg01no414_g20.b1 PHD_FILE: MSMg01no414_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:28 2005
(507 letters)
>mm_chr18_33345873_33346780
Length = 908
Score = 930 bits (481), Expect = 0.0
Identities = 499/505 (98%), Gaps = 3/505 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaacaggatgcggagcataaacactgtgaatggaagtcaacaggaaaagaatca 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattcaaacaggaggaggagcataaacactgtgaatggaagtcaacaggaaaagaatca 649
Query: 65 ccctcgtcagatgatgccctcctagtcagctgcctgtcaaggacccattcacaaaatgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccctcgtcagatgatgccctcctagtcagctgcctgtcaaggacccattcacaaaatgct 589
Query: 125 caaagcaccacactgtctccttccccaaaagctgtcagaggtttgtgcttgacctgctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caaagcaccacactgtctccttccccaaaagctgtcagaggtttgtgcttgacctgctga 529
Query: 185 agtgctgacactctaacagcctggagaaacctctgatcgaacgtcagttcccagtgtgac 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 528 agtgctgacactctaacagcctggagaaacctctgatagaacgtcagttcccagtgtgac 469
Query: 245 tgaacgcgtcagaacaaattattagtttaatgaaaaaaaaaattctgtgctattcatttt 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 468 tgaacgcgtcagaacaaattattagtttaatg-aaaaaaaaattctgtgctattcatttt 410
Query: 305 tcctgcccccattttggactttaaaagtaatac-tttttttaagtcaagaaaatccacac 363
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 409 tcctgcccccattttggactttaaaagtaatacttttttttaagtcaagaaaatccacac 350
Query: 364 aaaatattaaacagctattttgataaagtgctcattttcactcaaacacaaaatttgagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaatattaaacagctattttgataaagtgctcattttcactcaaacacaaaatttgagg 290
Query: 424 tattggatttcgtata-ccccccccccaattattctaagaagaaaatcatgctaactaag 482
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tattggatttcgtatacccccccccccaattattctaagaagaaaatcatgctaactaag 230
Query: 483 atctaatgctgtgccctctccgagg 507
|||||||||||||||||||||||||
Sbjct: 229 atctaatgctgtgccctctccgagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space: 446306
Effective search space used: 446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_g20.g1 MSMg01no414_g20.g1 CHROMAT_FILE:
MSMg01no414_g20.g1 PHD_FILE: MSMg01no414_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:28 2005
(333 letters)
>mm_chr18_33141111_33141840
Length = 730
Score = 532 bits (275), Expect = e-155
Identities = 308/333 (92%), Gaps = 23/333 (6%)
Strand = Plus / Plus
Query: 1 tgctctataggctgcttgtcgtaattaaacccagggcaattcacttcgaagaggtgcctg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgctctataggctgcttgtcataattaaacccagggcaattcacttcgaagaggtgcctg 280
Query: 61 gtagggggtggggtgcaggtgtatacacatgctcattatttatttatttatttatttatt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtagggggtggggtacaggtgtatacacatgctcattatttatttatttatttatttatt 340
Query: 121 tatttatttatttatttatttgcactgtttttgcagtaaaaagagtttctaggttcagga 180
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 341 t--------------------gcactgtttttgcagtaaaaagagtttctaggttcagga 380
Query: 181 aacaaagccactaggaaccagcaattattccccatgtctgtttctaatgaacacagctga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aacaaagccactaggaaccagcaattattccccatgtctgtttctaatgaacac---tga 437
Query: 241 ttttctgttttctgtcagtgcatacagtaagggtcacttcctcaaaagccattttgaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttttctgttttctgtcagtgcatacagtaagggtcacttcctcaaaagccattttgaagc 497
Query: 301 taagagagggagaactggaacagaaagggggca 333
|||||||||||||||||||||||||||||||||
Sbjct: 498 taagagagggagaactggaacagaaagggggca 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 730
Length adjustment: 9
Effective length of query: 324
Effective length of database: 721
Effective search space: 233604
Effective search space used: 233604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
