BAC Information

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BAC

Clone NameMSMg01-414J16
Chromosome18 (Build37)
Map Location 25,290,965 - 25,291,178
singlet/doubletsinglet
Overlap geneFhod3
Upstream geneGalnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414J16.T7 (MSMg01no414_j16.b1)MSMg01-414J16.TJ (MSMg01no414_j16.g1)
ACCAG510860AG510861
length782760
length of high quality
(start - end)
254 (67 - 320)219 (329 - 547)
definitionCHROMAT_FILE: MSMg01no414_j16.b1 PHD_FILE: MSMg01no414_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:42 2005CHROMAT_FILE: MSMg01no414_j16.g1 PHD_FILE: MSMg01no414_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGGATTGCGTAAGGGAAAAGAATGCACTGGAACAGTGTAAGGGA
GAAGAATGCACAGAAACAGTGTGAGGGAGAAGAATGCACTGGAACAGTGT
GAGGGAGAAGAATGCACTGGAACAGTGTGAGGGAGAAGAATGCACTGGAA
CAGTGTAAGGAAGAAGAATGCACAGAAACAGTGTGAGGGAGAAGAATGCA
CAGAAACAGTGTAAGGGAGAAGAATGCACTGGAACAGTGTAAGGGAGAAG
AATGCACTGGAACAGTGTGATGTTTTATGAATGCACAGAAACAGTGTGAG
GGAGAAGAATGCACTGGAACAGTGTGAGGGAGAAGAATGCACTGGAACAG
TGTAAGGGAGAAGAATGCACAGAAACAGTGTGAGGGAGAAGAATGCACAG
AAACAGTGTAAGGGAGAAGAATGCACTGGAACAGTGTGAGGGAGAAGAAT
GCACTGGAACAGTGTAAGGGAGAAGAATGCACAGAAACAGTGTGAGGGAG
AAGAATGCACTGGAACAGTGTGAGGGAGAAGAATGCACTGGAACAGTGTG
AGGGAGAAGAATGCACTGGAACAGTGTGAGGGAGAAGAATGCCCTGGAAC
AGTGCAAGGAAGATTATTGTTTCTAATCTGTGTGAGGTACAAATATTGTC
CTGCAACACCGTTTATCCATATATATTGCACCGGCTATGTTGTTCTGGTC
TATATATGCCCTTTGTTCTGGGCGTACTTGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCAGAAATTCACTTGGNTTATGGTTTTCTGCCCATAGG
AGGGCCTTTACATTTAGTTTTGTTGATGGTTTGCTTTTCCCCGGTGGGGC
TGTGATTTTTGTACCTGTCTAACAGAGAACCTGGCCAGAGACTTGTTCCT
CAAAATTGCCTCAGTTTGCTCTTTGGCATAGATTTAGGGGAGTTTGCTGA
TTATCCCAAACACTGTTCCTGAAGGTCCTTAGTCAAGTTGATACTTGAGA
TCCACATTACTCCGAGACTTTCTTGTATCATCGGCCCTTGCCATGGGCTC
TGCCTACCACTGGGCTGCACAGGGCCCCGGGTTCTTAGGTCTGTTCCTAT
CTCTGTATTCCCTCCCATAACTTTGCAGTTGGCACTTGCTGACCCCTCCT
GCTTATTTTCCCTTCTTGTATTTTCAGAGCCAAGTTTTCCATTTTGACTC
CTTCTCCTCTGTTACATTCCACCCTAGGAAGATAAGCTTTCCACATAGCA
CCTACACTCTCTGCAGTGTGCACCCATATTTTCAGAAACCCCGTGAGAAC
ATTTCTCCTCTTGCAATCTCGAGGTCTCTCCCTGGTTACTTTATTCCGCA
AAAGTAGACTTTCTCTTTTCTACCTTGGATCTTAAGAACATCCTGTGTCT
ACCGACTGCCTTGTATCTTCTTGCTAACACCTCCTTTCTCTCCTTGGCTC
CTTGGCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_j16.g1 MSMg01no414_j16.g1 CHROMAT_FILE:
MSMg01no414_j16.g1 PHD_FILE: MSMg01no414_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:42 2005
         (219 letters)



>mm_chr18_25290761_25291378
          Length = 618

 Score =  385 bits (199), Expect = e-111
 Identities = 211/215 (98%), Gaps = 1/215 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggcccttgccatgggctctgcctaccactgggctgcacagggccccgggttcttaggtct 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 ggcccttgccatgggctctgcctaccactgggctgcacagggccc-gggttcttaggtct 263

                                                                       
Query: 65  gttcctatctctgtattccctcccataactttgcagttggcacttgctgacccctcctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttcctatctctgtattccctcccataactttgcagttggcacttgctgacccctcctgc 323

                                                                       
Query: 125 ttattttcccttcttgtattttcagagccaagttttccattttgactccttctcctctgt 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 324 ttattttcccttcttgtattttcagagccaagttttccattttgactctttcttctctgt 383

                                              
Query: 185 tacattccaccctaggaagataagctttccacata 219
           ||||||||||||||||||||| |||||||||||||
Sbjct: 384 tacattccaccctaggaagatgagctttccacata 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 618
Length adjustment: 9
Effective length of query: 210
Effective length of database: 609
Effective search space:   127890
Effective search space used:   127890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)