MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-415B22
Chromosome	18 (Build37)
Map Location	47,071,197 - 47,071,658
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798
Downstream gene	Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Link	Open Mouse BAC browser

Click to get alignment info.

name	Trim36 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28105 MGI:106264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042905 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042905
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Pggt1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225467 MGI:1917514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc112 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240261 MGI:1918800
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 4 Proteins

name	EG225468 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225468 MGI:3647072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	LOC100042916 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042916
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Mospd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72076 MGI:1919326
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs, 15 Proteins

name	LOC100042204 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Fem1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240263 MGI:2444737
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ticam2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225471 MGI:3040056
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13664 MGI:95298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042226 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Cdo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12583 MGI:105925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67526 MGI:1914776
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ap3s1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11777 MGI:1337062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	4833403I15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74574 MGI:1921824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins

name	LOC666798 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Gm949 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381142 MGI:2685795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042241 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042241
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins pseudo : _no_value

name	Commd10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69456 MGI:1916706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG628438 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628438 MGI:3644923
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 235 ESTs, 5 Proteins

name	LOC667120 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Sema6a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20358 MGI:1203727
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628477 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628477
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 262 ESTs, 6 Proteins pseudo : _no_value

name	9130209A04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77668 MGI:1924918
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	A730092B10 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:328953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC383325 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383325
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100042982 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100042284 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042284
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Trim36 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254334 GeneID:28105 MGI:106264
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 36 transcript_id : NM_178872.3

name	LOC100042905 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269824 GeneID:100042905
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100042905 transcript_id : XM_001479433.1

name	Pggt1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802404 GeneID:225467 MGI:1917514
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein geranylgeranyltransferase type I, beta subunit transcript_id : NM_172627.2

name	Ccdc112 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269826 GeneID:240261 MGI:1918800
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 4 Proteins product : coiled-coil domain containing 112 transcript_id : XM_140320.7

name	EG225468 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82996331 GeneID:225468 MGI:3647072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : predicted gene, EG225468 transcript_id : XM_140321.4

name	LOC100042916 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269828 GeneID:100042916
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100042916 transcript_id : XM_001479448.1

name	Mospd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269830 GeneID:72076 MGI:1919326
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs, 15 Proteins product : motile sperm domain containing 4 transcript_id : XM_128948.6

name	Fem1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802716 GeneID:240263 MGI:2444737
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fem-1 homolog c (C.elegans) transcript_id : NM_173423.2

name	Ticam2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328395 GeneID:225471 MGI:3040056
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor adaptor molecule 2 transcript_id : NM_173394.2

name	Eif1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802731 GeneID:13664 MGI:95298
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 1A transcript_id : NM_010120.4

name	LOC100042226 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269758 GeneID:100042226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100042226 transcript_id : XM_001477756.1

name	Cdo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130772 GeneID:12583 MGI:105925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine dioxygenase 1, cytosolic transcript_id : NM_033037.3

name	Atg12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386474 GeneID:67526 MGI:1914776
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autophagy-related 12 (yeast) transcript_id : NM_026217.2

name	Ap3s1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362739 GeneID:11777 MGI:1337062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adaptor-related protein complex 3, sigma 1 subunit transcript_id : NM_009681.4

name	LOC100042950 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269832 GeneID:100042950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : similar to RNP particle component transcript_id : XM_001479502.1

name	4833403I15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404446 GeneID:74574 MGI:1921824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 7 Proteins product : RIKEN cDNA 4833403I15 gene transcript_id : XM_988298.1

name	Gm949 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119360324 GeneID:381142 MGI:2685795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 949, (NCBI) transcript_id : NM_001033446.2

name	Commd10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130588 GeneID:69456 MGI:1916706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COMM domain containing 10 transcript_id : NM_178377.4

name	EG628438 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404451 GeneID:628438 MGI:3644923
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 235 ESTs, 5 Proteins product : predicted gene, EG628438 transcript_id : XM_893180.2

name	Sema6a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67846118 GeneID:20358 MGI:1203727
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A transcript_id : NM_018744.2

name	9130209A04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404452 GeneID:77668 MGI:1924918
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 9130209A04 gene transcript_id : XM_488851.3

name	A730092B10 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269835 GeneID:328953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein A730092B10 transcript_id : XM_001479574.1

name	LOC100042982 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269837 GeneID:100042982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100042982 transcript_id : XM_001479585.1

name	Trim36 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254335 CCDS:CCDS29229.1 GeneID:28105 MGI:106264
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0005576 - extracellular region [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0008061 - chitin binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007340 - acrosome reaction [Evidence IMP]; GO:0006030 - chitin metabolism [Evidence IEA] codon_start : 1 note : acrosome RBCC protein product : haprin protein_id : NP_849203.2

name	LOC100042905 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269825 GeneID:100042905
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479483.1

name	Pggt1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369904 CCDS:CCDS29230.1 GeneID:225467 MGI:1917514
definition	GO_function : GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : geranylgeranyltransferase type I protein_id : NP_766215.1

name	Ccdc112 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269827 GeneID:240261 MGI:1918800
definition	codon_start : 1 product : similar to mutated in bladder cancer 1 protein_id : XP_140320.7

name	EG225468 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996332 GeneID:225468 MGI:3647072
definition	codon_start : 1 product : hypothetical protein protein_id : XP_140321.4

name	LOC100042916 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269829 GeneID:100042916
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479498.1

name	Mospd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269831 GeneID:72076 MGI:1919326
definition	codon_start : 1 product : motile sperm domain containing 4 protein_id : XP_128948.6

name	Fem1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734132 CCDS:CCDS29231.1 GeneID:240263 MGI:2444737
definition	codon_start : 1 product : fem-1 homolog c protein_id : NP_775599.1

name	Ticam2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734184 CCDS:CCDS29232.1 GeneID:225471 MGI:3040056
definition	GO_component : GO:0045323 - interleukin-1 receptor complex [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005149 - interleukin-1 receptor binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0001817 - regulation of cytokine production [Evidence IMP]; GO:0043122 - regulation of I-kappaB kinase/NF-kappaB cascade [Evidence ISS]; GO:0045357 - regulation of interferon-beta biosynthesis [Evidence ISS] codon_start : 1 note : TIR domain-containing adapter protein; Toll-interleukin I receptor domain (TIR)-containing adaptor molecule (TICAM) 2; TRIF-related adapter molecule TRAM; TRIF-related adaptor molecule product : toll-like receptor adaptor molecule 2 protein_id : NP_775570.1

name	Eif1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981781 CCDS:CCDS29233.1 GeneID:13664 MGI:95298
definition	GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : eukaryotic translation initiation factor 1A protein_id : NP_034250.2

name	LOC100042226 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269759 GeneID:100042226
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477806.1

name	Cdo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14719434 CCDS:CCDS29234.1 GeneID:12583 MGI:105925
definition	GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0017172 - cysteine dioxygenase activity [Evidence TAS]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA] GO_process : GO:0019452 - L-cysteine catabolism to taurine [Evidence TAS]; GO:0046439 - L-cysteine metabolism [Evidence IEA]; GO:0019530 - taurine metabolism [Evidence TAS] codon_start : 1 note : cytosolic cysteine dioxygenase 1 product : cysteine dioxygenase 1, cytosolic protein_id : NP_149026.1

name	Atg12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385722 GeneID:67526 MGI:1914776
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence ISS]; GO:0000045 - autophagic vacuole formation [Evidence IEA]; GO:0006914 - autophagy [Evidence TAS] [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : autophagy 12-like product : autophagy-related 12-like protein_id : NP_080493.1

name	Ap3s1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753078 CCDS:CCDS29236.1 GeneID:11777 MGI:1337062
definition	GO_component : GO:0030662 - coated vesicle membrane [Evidence IEA]; GO:0005802 - Golgi trans face [Evidence TAS] GO_process : GO:0006886 - intracellular protein transport [Evidence TAS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence TAS] codon_start : 1 note : adaptor-related protein complex AP-3, sigma 1 subunit product : adaptor-related protein complex 3, sigma 1 subunit protein_id : NP_033811.1

name	LOC100042950 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269833 GeneID:100042950
definition	codon_start : 1 product : similar to RNP particle component protein_id : XP_001479552.1

name	4833403I15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94404447 GeneID:74574 MGI:1921824
definition	codon_start : 1 product : hypothetical protein LOC74574 protein_id : XP_993392.1

name	Gm949 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701959 CCDS:CCDS29237.1 GeneID:381142 MGI:2685795
definition	codon_start : 1 product : hypothetical protein LOC381142 protein_id : NP_001028618.1

name	Commd10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30410016 CCDS:CCDS29238.1 GeneID:69456 MGI:1916706
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : COMM domain containing 10 protein_id : NP_848464.1

name	EG628438 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996341 GeneID:628438 MGI:3644923
definition	codon_start : 1 product : similar to CPN10-like protein protein_id : XP_898273.1

name	Sema6a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67846119 GeneID:20358 MGI:1203727
definition	GO_component : GO:0030424 - axon [Evidence NAS]; GO:0016021 - integral to membrane [Evidence ISS] [Evidence IEA]; GO:0016020 - membrane [Evidence NAS] [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence NAS]; GO:0007411 - axon guidance [Evidence NAS]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence ISS]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence ISS] [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence ISS] codon_start : 1 product : sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A protein_id : NP_061214.2

name	9130209A04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996349 GeneID:77668 MGI:1924918
definition	codon_start : 1 product : hypothetical protein LOC77668 protein_id : XP_488851.2

name	A730092B10 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269836 GeneID:328953
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479624.1

name	LOC100042982 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269838 GeneID:100042982
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479635.1

name	LOC100042204 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042204
definition	number : 1 pseudo : _no_value

name	LOC666798 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666798
definition	number : 1 pseudo : _no_value

name	LOC667120 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667120
definition	number : 1 pseudo : _no_value

name	LOC667120 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667120
definition	number : 2 pseudo : _no_value

name	LOC383325 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383325
definition	number : 1 pseudo : _no_value

name	LOC100042284 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042284
definition	number : 1 pseudo : _no_value

name	LOC100042284 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042284
definition	number : 2 pseudo : _no_value

name	LOC100042284 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042284
definition	number : 3 pseudo : _no_value

name	LOC100042241 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269760 GeneID:100042241
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins product : similar to hCG1789329 pseudo : _no_value transcript_id : XR_033389.1

name	LOC628477 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269834 GeneID:628477
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 262 ESTs, 6 Proteins product : similar to ribosomal protein L6 pseudo : _no_value transcript_id : XR_034277.1

clone name	MSMg01-496E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194O22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-415B22.T7 (MSMg01no415_b22.b1)	MSMg01-415B22.TJ (MSMg01no415_b22.g1)
ACC	AG511254	AG511255
length	727	726
length of high quality (start - end)	566 (62 - 627)	445 (67 - 511)
definition	CHROMAT_FILE: MSMg01no415_b22.b1 PHD_FILE: MSMg01no415_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:24 2005	CHROMAT_FILE: MSMg01no415_b22.g1 PHD_FILE: MSMg01no415_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:24 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT GATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATCTTGTCGAATGC TTTTTCCGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGT TTATATAATGGATTACGTTGATGGATTTCCGTATTAAACCATCCCTGCAT TCCTGGAATAAAACCTACTTGGCCAGGATGGATGATTGCTTTAATGTGTT CTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCTATATTC ATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGG TTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTTC CATCTACTTCTATTTTGTGGAATAGTTTATGCAGAACTGGAATTAGATCT TCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGGTCCTGGGCT TTTTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGATA TGGGACTGTTTAGATCGTTAACTTGATCCTGATTTAACTTTGGTACCTGG TATCTGTCTAGAAATTTGTCCATTTCATCCAGGTTTTTCAGTTTTGCTGA GNATAGCCTTTTGTACAAGGATCTGATGGTGTTTTGGGTTCCTCCAGCAT CTGTTTTTTTGTCTCCCTTTTCCTTTT	GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXTTGAGATAGCGAGGGGTCTGTTTTACCTTAAAGA TACTTTAGTATTAATGCACAAGAGTCTTAGTTCCACTCGGGAGGCAGAGG CAGGCGGATTTCTGAGTTCGAGGCTAGCCTGGTCTACAAAGTGAGTTCCA GGGCAGCCAAGACTACACAGAGAAACCCTGTCTCGAAAAACCTTTAAAAA AAAAAAAAAAAAAAAAAAAAGAGATTGAGTCTTAGTTCTACTCCTACCCT TGAAAGAAATCTCTTTCCTGGACTAGGGCTTTTGCACCATCTGTTGGATC TGTTGGACATGTTTATTTTATACATACAAGAGAGAAACGTTGAGAGCGGA GAGTAGGGCTGGCAGAGGCAAGGCCTCACAATGGTTATTTTTGTAGTTTT GCTAGGGAGCTGAGGGATGAGAACCAATGAGCTAAGGCTATATCTTATGA GAGCGGAGCATCAGACGTACAGCATAATATGAAAATACTACGAACGCTTG TAGATGTATAAGATGTGGAACATAGAAATATACTTAGGACGAGAGCCCAC AAGTTCATTCTCTTTACAATGGAACATGCCCGACTTAAAGCCTACCTATA CGGCGGGTCGCGTCAAACATCAAGGTGATTATTCTTGTTGCCTACCCTCT TGTTTGCCATCTGTTCCATCTGCCTG
quality values	Open. Hide. 19 19 15 15 12 12 12 13 25 37 32 29 29 33 37 37 37 59 29 25 23 16 13 9 15 9 9 9 9 11 19 19 20 13 11 17 17 22 25 59 59 59 22 18 18 21 23 25 41 41 28 28 14 14 14 24 11 8 8 8 8 15 25 37 37 37 37 42 33 33 36 36 36 36 36 36 36 37 42 43 43 43 43 43 53 53 48 50 50 53 53 68 68 68 53 53 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 48 42 38 42 42 50 57 57 57 57 68 51 51 51 51 51 51 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 48 48 48 48 48 41 50 50 50 57 68 68 51 51 50 50 50 51 50 50 50 51 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 62 62 62 68 68 68 68 62 59 59 35 43 38 44 43 31 31 35 44 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 57 57 57 57 57 59 59 57 57 57 52 52 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 54 54 54 59 59 59 59 57 48 48 48 59 59 59 59 57 57 57 57 57 57 59 59 59 59 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 50 53 59 59 47 50 47 47 44 44 44 39 39 44 44 44 47 59 59 47 59 59 59 59 59 48 48 48 59 59 59 59 59 59 39 37 34 39 39 36 37 41 39 39 34 39 37 37 37 37 29 31 44 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 47 43 35 35 35 41 41 30 37 37 30 25 29 39 37 47 47 47 47 47 47 32 32 22 28 26 14 14 17 25 37 37 37 37 37 39 39 37 37 34 34 28 28 28 34 32 37 41 41 41 39 31 15 20 10 12 12 17 18 22 25 22 25 34 34 28 28 26 24 16 16 10 9 8 8 8 9 11 22 25 29 36 29 24 27 19 17 13 22 12 11 11 17 18 31 27 16 17 18 17 16 12 12 15 15 9 9 9 13 11 3 0 3 14 12 12 10 11 12 17 25 16 8 8 8 8 8 8 8 10 10 14 21 21 29 23 16 13 11 11 11 13 26 25 19 8 8 8 8 8 8 11 8 8 9 10 8 9 11 18 16 19 18 18 10 11 10 8 8 8 10 15 24 37 18 18 10 12 10 15 11 11 10 10 21 15 15	Open. Hide. 7 7 7 8 8 8 12 25 34 39 43 43 44 44 44 41 41 44 25 23 15 9 9 9 9 9 10 13 13 10 12 12 21 19 31 20 19 31 34 37 37 37 37 37 37 42 41 33 27 15 9 9 10 14 14 20 17 16 21 26 15 17 17 19 28 23 47 47 47 33 33 33 36 36 36 57 57 59 59 57 50 50 53 53 53 53 53 50 50 50 50 42 41 39 44 44 41 35 37 41 41 37 37 50 41 48 48 48 48 48 48 50 36 36 37 37 37 43 57 50 50 50 53 53 53 50 68 68 68 68 57 48 48 47 47 48 50 59 57 48 48 48 53 50 68 68 59 59 59 44 48 48 57 57 57 42 48 41 42 42 50 57 57 57 57 57 57 57 57 57 57 59 48 59 59 59 59 59 57 57 68 68 68 68 68 68 57 57 54 57 57 48 48 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 57 57 57 57 68 57 57 57 57 57 57 57 57 57 57 57 57 52 57 57 59 59 59 68 68 59 59 59 44 38 28 24 24 11 11 12 12 13 23 23 42 43 43 41 35 35 42 43 52 57 59 59 57 52 57 57 57 57 57 57 57 57 52 57 57 57 57 57 43 43 35 59 59 59 47 35 35 47 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 52 52 52 52 47 47 26 26 12 18 12 18 18 38 38 52 52 52 57 57 57 57 57 57 57 57 57 57 57 59 59 59 50 43 43 50 50 50 54 57 57 43 43 43 46 57 57 57 57 57 43 43 43 57 57 57 57 57 48 48 48 48 59 59 59 59 59 59 57 57 59 43 43 43 46 43 43 43 43 43 48 48 57 48 48 46 43 43 36 43 43 41 39 35 39 39 39 39 43 43 37 34 32 23 23 28 34 39 46 46 43 43 39 39 39 34 32 25 25 25 34 28 24 17 25 17 19 20 32 32 35 35 39 59 48 47 47 46 48 34 37 28 35 35 37 40 43 43 43 48 46 46 43 43 43 43 43 43 43 43 47 33 37 28 23 23 18 28 24 30 28 37 42 37 35 37 39 47 43 39 42 42 42 35 29 20 20 14 23 28 42 42 37 37 43 43 32 32 28 37 37 39 39 43 43 39 40 28 23 15 15 13 18 18 31 26 24 23 14 14 14 23 23 25 25 25 28 34 28 28 23 23 23 23 24 24 19 16 19 12 12 15 19 10 8 8 6 13 6 7 8 12 19 28 18 20 20 15 18 11 11 11 15 13 15 16 15 15 16 19 12 12 11 11 8 8 8 8 8 8 9 9 9 9 9 10 11 13 17 18 15 15 15 21 17 17 9 10 10 8 8 8 8 10 8 8 8 13 17 22 28 28 23 26 18 20 19 17 21 19 19 16 15 11 11 10 13 9 9 9 11 10 8 8 8 10 9 9 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 9 10 10 9 8 8 8 8 6 6 7 6 8 8 8 6 6 6 8 8 8 9 10 10 10 8 9 9 8 8 8 11 13 10 9 9 8 8 8 6 8 8 8 8 8 11 10 12 8 10 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no415_b22.g1 MSMg01no415_b22.g1 CHROMAT_FILE:
MSMg01no415_b22.g1 PHD_FILE: MSMg01no415_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:24 2005
         (445 letters)



>mm_chr18_47071014_47071858
          Length = 845

 Score =  698 bits (361), Expect = 0.0
 Identities = 429/467 (91%), Gaps = 27/467 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagatagcgaggggtctgttttaccttaaagatactttagtattaatgcacaagagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttgagatagcgaggggtctgttttaccttaaagatactttagtattaatgcacaagagtc 243

                                                                       
Query: 61  ttagttccactcgggaggcagaggcaggcggatttctgagttcgaggctagcctggtcta 120
           ||||||||||| ||||||||||||||||| ||||||||| || ||||| |||||||||||
Sbjct: 244 ttagttccacttgggaggcagaggcaggcagatttctgaatttgaggccagcctggtcta 303

                                                                       
Query: 121 caaagtgagttccagggcagccaagactacacagagaaaccctgtctcgaaaaaccttta 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |
Sbjct: 304 caaagtgagttccagggcagccaagactacacagagaaaccctgtctcaaaaaacc---a 360

                                                                       
Query: 181 aaaaaaaaaaaaaaaaaa---------------------a-aaaaagagattgagtctta 218
           ||||||||||||||||||                     | | | |||||  ||||||||
Sbjct: 361 aaaaaaaaaaaaaaaaaagagagagagagagagagagagagagagagaga--gagtctta 418

                                                                       
Query: 219 gttctactcctacccttgaaagaaatctctttcctggactagggcttttgcaccatctgt 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gttctactcctacccttgaaagaaatctctttcctggactagggcttttgcaccatctgt 478

                                                                       
Query: 279 tggatctgttggacatgtttattttatacatacaagagagaaacgttgagagcggagagt 338
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 479 tggatctgttggacatgtttattttatacatacaagagagaaatgttgagagcggagagt 538

                                                                       
Query: 339 agggctggcagaggcaaggcctcacaatggttatttttgtagttttgctagggagctgag 398
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 539 agggctggcagaggcaaggcctcgcaatggttatttttgtagttttgctagggagctgag 598

                                                          
Query: 399 ggatgagaaccaatgagctaaggctatatcttatgagagcggagcat 445
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 599 ggatgagaaccaatgaactaaggctatatcttatgagagcggagcat 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information