BAC Information

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BAC

Clone NameMSMg01-415E12
Chromosome18 (Build37)
Map Location 38,349,954 - 38,350,193
singlet/doubletsinglet
Overlap genenone
Upstream genePcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
Downstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415E12.T7 (MSMg01no415_e12.b1)MSMg01-415E12.TJ (MSMg01no415_e12.g1)
ACCAG511377AG511378
length732736
length of high quality
(start - end)
240 (64 - 303)59 (178 - 236)
definitionCHROMAT_FILE: MSMg01no415_e12.b1 PHD_FILE: MSMg01no415_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:37 2005CHROMAT_FILE: MSMg01no415_e12.g1 PHD_FILE: MSMg01no415_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXATACAATAGAGGATCCGCGGAATTCCC
CTTTCGATGAGAGCTGAGGAAACCCCGTTGTCATTTAGAGCCCCTCCCCC
GCCCCTACACAAACACACATAGAGTCGTGGTTATACAAATCTACTCCATC
AGACACCTGTCCCCAGACAAAGACTGCACATACCTTCCAAGTACCCTCAA
GCCTTACATGCTCCCAGCTTCCTCACAACCCCTCCCCACCCTAGCAGAGC
AATGTTTCACTTTAAAGCCAAGGGGAGAAGGGGAGGAGACGAGCATCTAT
GTGGTTTGTCCTCACATAAGCACACACACACACAGACACACAACAACAAG
TATACTCATGCAGCCCCTGCCCACCTCACACCAGCCCCTCACCAGCCACC
ACCCTGGTCTTGCCTCCATCTCCCTGCCCAGAACACCCACTTTAATAGGA
GTTGGCCGCCTGACATCTCTCATATTCCAGCGTGGCTGCTGGTCATTTAT
AGTTCTCCATTCCAATCTGTTTGTTCATGATTACTTCCTGTTCCCACTTG
TCCTGGCCCCCTCTTTTTCTGTGTACCCCCCATTCTTCCACCCCCCTTCA
TGGACTCTACTCACAAATTCTTGCCCTAGCTCATTTCTTCTTTTTTCCCT
AACTTGTCCCCCCGCTTATCCTTCTTCTTACATTGCCCCATACTTCGTTC
TTTATCCCCTTTACTCCATAACCTTCCTTCAC
TTTGTTAGGCCTGGAGGCCGCCTTTACATACACTGTAGGNGAACTATAGA
TTGCTACACAGGAATCATTACTCTTTGCTGCTGAGATAAAACACCCTAAG
CAACGGTTATTTTAAGGAAGGGTTTATCTTCCTTTACGGTTCCAGAGGGC
TACAAATTCACAGTAGCAGGGAAGGGTATGGCTGTAGGAACCGGAAGCTG
ACATATCGTCTCTCAACTGCACACAAGAAGCAGATGATTCTAGAAGGAAA
TGTAGTGATGCTATAAACCCCTAAAGCCTGCTCCCATTAAGGGACTAACT
CCTGCGTGATTGCACCCTTTAAGGATTCCATAACCTCTCGAAACAGTGCC
ACCAAGTGTTCAATCACATGAGCCTCTGGGGACATTCCACATTCATACCA
TGAGAGTAACTGAACTCAGACAGATGATTCCCCAGGGGTAGTTGAGAAGA
GGAAATGTCTTATGACCAGTTACGGACCCCCCCTTTCTCTGCCTTGATTC
GAGTTGTGAATCGTTTGCTCGTCCGCCTTTGTGTCCTTGACCACCGCCAC
ACCTATCCTGAAACAATACCCGCTTATATGCTCCTTTCCCCATTGCTTCT
GGTTACCAGCCTATGTCTTCCTTCCCCCTCGTTTTTTTTTCTGTTTTCGG
ACCCTTTCCTTTCCCCGCCTTTTCGTTCCTCTCTTTCCTCCCCTCGTCTC
ATTTCCTCCTTTATTCTCTCCACCCTTTTCTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_e12.b1 MSMg01no415_e12.b1 CHROMAT_FILE:
MSMg01no415_e12.b1 PHD_FILE: MSMg01no415_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:37 2005
         (240 letters)



>mm_chr18_38349754_38350393
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaggaaaccccgttgtcatttagagcccctcccccgcccctacacaaacacacataga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctgaggaaaccccgttgtcatttagagcccctcccccgcccctacacatacacacataga 260

                                                                       
Query: 61  gtcgtggttatacaaatctactccatcagacacctgtccccagacaaagactgcacatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcgtggttatacaaatctactccatcagacacctgtccccagacaaagactgcacatac 320

                                                                       
Query: 121 cttccaagtaccctcaagccttacatgctcccagcttcctcacaacccctccccacccta 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 321 cttccaagtaccctcaagccttacatgctcccagcttcctaacaacccctccccacccga 380

                                                                       
Query: 181 gcagagcaatgtttcactttaaagccaaggggagaaggggaggagacgagcatctatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagagcaatgtttcactttaaagccaaggggagaaggggaggagacgagcatctatgtg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)