BAC Information

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BAC

Clone NameMSMg01-415N18
Chromosome18 (Build37)
Map Location 77,912,389 - 77,912,880
singlet/doubletsinglet
Overlap gene8030462N17Rik
Upstream geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165
Downstream gene4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N18.T7 (MSMg01no415_n18.b1)MSMg01-415N18.TJ (MSMg01no415_n18.g1)
ACCAG511817AG511818
length743729
length of high quality
(start - end)		439 (58 - 496)491 (68 - 558)
definitionCHROMAT_FILE: MSMg01no415_n18.b1 PHD_FILE: MSMg01no415_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:21 2005CHROMAT_FILE: MSMg01no415_n18.g1 PHD_FILE: MSMg01no415_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGG
GTTGCACCAGCTTCCCTGAACATTTGCTTCTTATTCAGGCTTGATATGCC
TTAGGCTTGAGAGATGTTTGAAACAGAATAAGGAAAAATTAGGTACACGG
ACCTTCAATCCAAGCATTTGGGAGGTGGAAAGAAACAAGAATATCAAGAG
TTTACAGTTCTCTTCAGCTCCATACTAAGTTTGAGGCCAGCCTGAGATGA
GAGAGAGAGAGAGAGAGAGAGGACTCAGTAGGTAAACCGCTTGACAGTAA
GTACAATGATCCAAGTTTGCTTCCCAGTACACATATGGTACACAGCTGAA
TTTCAGTGCTGAGGAAGCAGGAACAGGCAAGTTCCTGTGGCTCTCACTGG
CCAAGCAGCCACATTCATTGGCCAGCTCCAGGTCCTGGTGAGAGACCTTG
TCTCAAAGAACATGGTAGGCATCGCCTGAGGGATGATAACTGAGGCTAGC
TGTGGTGGTTTCCATAGGTTTGGTCCCCATAGACTCATGTGTTTGAATGC
TTAGCCCACAGGGAGTGGCACTATTAAGAAAGGTAGCCCTGTTCCAGTTG
GCGTGCCCTCTTTACGGAAATGTGCCCCAGCGGCGGAGGTCTTTTGTCGT
TTTCCCGTGCCTATCCTTTATTCTTTGCGGCATTAATTATTTTTTCTGGC
CTTCCTTCGCTCAATTCTTACCTCTTTCTCCTTCCCTTCCTTT

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATTTCTTAAAATAATCTTGTCCCTATCATTAA
CCACTTAATGTTTTTGCTGATGTGCTAAAAAGTGCACTGGCAACTCAGAA
TAGGTTTGTTTTTTAAGTTGGCCATGTCTTTTTAATAGACTGCAGTCTTC
AAATTTATATAGAGCTGCAGTCTCCTGGATTTTTTCAAGTGTCACACATC
TAACTGAGTCTGACAGCTGAGAAAGGCCACCAGGTGCTTACAGTCAGTTT
AAAAAACATCCTCTACCTGGTATCTCTGCAGTGATTGTCTTGCTGCTCCC
TGAAACCTCGTCATCATCATCTGAGGAACTCGTGCTTGAGTCACAAGTCA
GGTCACTGTCACTGGTACTACTGTCCTGCAGCAGGTTGTACTTCTTCCTT
GCAGCAGCCTCCCGTTTCTGCCTCAGTAGTCTGATCCTCTCCTTGTGCTT
TTGGCTCCGATGACCTTTAACCTTGGTGACTCTGCCATTCTGCTTATCGC
TGGATTGCCGGTTTTTCTTGGCAGCCATAGTATATGTTTCACTTTCAGAA
CGGGACCGCCGAGACTTTCTGCCCACAGTGGTACCAAACACTCCCTGAAG
ATCCTCTTTCCCGGCGTGTTTCCGCTTGCCAAGGGCTCATCTTCTTCATA
GAAAAAAATGCTTCTTAACACACCCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n18.g1 MSMg01no415_n18.g1 CHROMAT_FILE:
MSMg01no415_n18.g1 PHD_FILE: MSMg01no415_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:21 2005
         (491 letters)



>mm_chr18_77912189_77913080
          Length = 892

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcttaaaa-taatcttgtccctatcattaaccacttaatgtttttgctgatgtgct 59
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcttaaaaataatcttgtccctatcattaaccacttaatgtttttgctgatgtgct 260

                                                                       
Query: 60  aaaaagtgcactggcaactcagaataggtttgttttttaagttggccatgtctttttaat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagtgcactggcaactcagaataggtttgttttttaagttggccatgtctttttaat 320

                                                                       
Query: 120 agactgcagtcttcaaatttatatagagctgcagtctcctggattttttcaagtgtcaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactgcagtcttcaaatttatatagagctgcagtctcctggattttttcaagtgtcaca 380

                                                                       
Query: 180 catctaactgagtctgacagctgagaaaggccaccaggtgcttacagtcagtttaaaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctaactgagtctgacagctgagaaaggccaccaggtgcttacagtcagtttaaaaaa 440

                                                                       
Query: 240 catcctctacctggtatctctgcagtgattgtcttgctgctccctgaaacctcgtcatca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcctctacctggtatctctgcagtgattgtcttgctgctccctgaaacctcgtcatca 500

                                                                       
Query: 300 tcatctgaggaactcgtgcttgagtcacaagtcaggtcactgtcactggtactactgtcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatctgaggaactcgtgcttgagtcacaagtcaggtcactgtcactggtactactgtcc 560

                                                                       
Query: 360 tgcagcaggttgtacttcttccttgcagcagcctcccgtttctgcctcagtagtctgatc 419
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 tgcagcaggttgtacttcttccttgcagctgcctcccgtttctgcctcagtagtctgatc 620

                                                                       
Query: 420 ctctccttgtgcttttggctccgatgacctttaaccttggtgactctgccattctgctta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctccttgtgcttttggctccgatgacctttaaccttggtgactctgccattctgctta 680

                       
Query: 480 tcgctggattgc 491
           ||||||||||||
Sbjct: 681 tcgctggattgc 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space:   424242
Effective search space used:   424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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