Query= MSMg01no416_n04.b1 MSMg01no416_n04.b1 CHROMAT_FILE:
MSMg01no416_n04.b1 PHD_FILE: MSMg01no416_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:32 2005
(584 letters)
>mm_chr18_12124857_12125839
Length = 983
Score = 1087 bits (562), Expect = 0.0
Identities = 574/578 (99%), Gaps = 1/578 (0%)
Strand = Plus / Plus
Query: 7 gaattccccacaaaggcgtggggagttggctaactataaactaagtctcctcaggcaagt 66
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccccacaaaggggtggggagttggctaactataaactaagtctcctcaggcaagt 266
Query: 67 ctgagcaaaactgcccttccccagactgcctctgagctctcctccactccacccccacac 126
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 ctgagcaaaactgcccttccccagactgcctctcagctctcctccactccacccccacac 326
Query: 127 ttgggtacccaatctctaaggcttcttgagtttgccctcccccagctgtatctggcactt 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 ttgggtacccaatctctaaggcttcttgagtt-gccctcccccagctgtatctggcactt 385
Query: 187 agatgttgctttaaaaagtattccccaaaacttggctctcaaggtaactaagctggaaga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agatgttgctttaaaaagtattccccaaaacttggctctcaaggtaactaagctggaaga 445
Query: 247 aaggccctgttttcatttggtgtctgcctctggatcacctggcctcctctgcatggacat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaggccctgttttcatttggtgtctgcctctggatcacctggcctcctctgcatggacat 505
Query: 307 tagtcaccaaaagtgtatccatgtagataactaacatactccaacaagtcactgtcccaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tagtcaccaaaagtgtatccatgtagataactaacatactccaacaagtcactgtcccaa 565
Query: 367 agctgcagtcccctttaattctagggatagcaaggtctataggcaggacagcccaacctc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agctgcagtcccctttaattctagggatagcaaggtctataggcaggacagcccaacctc 625
Query: 427 aaataactacagcaattatggtggagagcctagccctccagtaagacccaaggtctacca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaataactacagcaattatggtggagagcctagccctccagtaagacccaaggtctacca 685
Query: 487 tgcaggatctaggcagagacaatgacaggcaaggacacaccctggccagaacagcggagt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 686 tgcaggatctaggcagagacaatgacaggcaaggacacaccctggccagaacagctgagt 745
Query: 547 ttatacataccattgaccctctcctgattcttgtaaga 584
||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttatacataccattgaccctctcctgattcttgtaaga 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_n04.g1 MSMg01no416_n04.g1 CHROMAT_FILE:
MSMg01no416_n04.g1 PHD_FILE: MSMg01no416_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:32 2005
(523 letters)
>mm_chr18_12274166_12275091
Length = 926
Score = 772 bits (399), Expect = 0.0
Identities = 442/459 (96%), Gaps = 7/459 (1%)
Strand = Plus / Minus
Query: 70 agttgaaccagcctgccagagctcagtgagcacaagaaagggcgagcttactccgcagcc 129
|||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||
Sbjct: 926 agttgaaccagcctgccagagctcagaaagaacaagaaagggcaagcttactccgcagcc 867
Query: 130 agtctcagaggctgaagacaatctaggcctggatacgattgtactgaggctagaagcttc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agtctcagaggctgaagacaatctaggcctggatacgattgtactgaggctagaagcttc 807
Query: 190 caggactaggactaggttaacagatagaagcagtaagcctaagatgacaattaatacagg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 caggactaggactaggttaacagatagaagcagtaagcctaagatgacaattaatacagg 747
Query: 250 agaataaaaattacatttgcccaactaataatatgctcattgtgtaatccttccttttgc 309
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agaataaaaattacatttacccaactaataatatgctcattgtgtaatccttccttttgc 687
Query: 310 ctttgggtccttaaaacaatgtatagttagtcttctgtggtcttttt----gggggaata 365
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 686 ctttgggtccttaaagcaatgtatagttagtcttctgtggtctttttttggggggg--ta 629
Query: 366 ttcttttgttaagtttttagggagaagagctgctgacttttttttta-aagcatatgcca 424
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 628 ttcttttgttaagtttttagggagaagagctgctgactttttttttttaagcatatgcca 569
Query: 425 tttacatatgtatagaacacctccctcatgcttctctgtagagatgtgtttgggggatgg 484
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttacatatgtatagagcacctccctcatgcttctctgtagagatgtgtttgggggatgg 509
Query: 485 agagatggtgtcatggttaagagcacaagctgttcctaa 523
||| |||| ||||||||||||||||||||||||||||||
Sbjct: 508 agacatggcgtcatggttaagagcacaagctgttcctaa 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 926
Length adjustment: 10
Effective length of query: 513
Effective length of database: 916
Effective search space: 469908
Effective search space used: 469908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
