Query= MSMg01no416_n13.b1 MSMg01no416_n13.b1 CHROMAT_FILE:
MSMg01no416_n13.b1 PHD_FILE: MSMg01no416_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:33 2005
(600 letters)
>mm_chr18_44417549_44418545
Length = 997
Score = 319 bits (165), Expect = 3e-91
Identities = 210/227 (92%), Gaps = 5/227 (2%)
Strand = Plus / Plus
Query: 1 tagaggttgattttctctgtagttctttcaaaatacatttttactacaccaaaaaacact 60
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 201 tagaggttgattttctctgtagttctttcaaagtacatttctactacgccaaaaaacact 260
Query: 61 gacatttggtattaaaattctctccagtaggctgattcttaaagagaataa-gtgtcaaa 119
||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 261 gacatttggcattaaaattctctccagtaggctgatccttaaagagaataaagtgtcaag 320
Query: 120 atttctatttacattatagactattactagaatcttttatttaaaataccaacaaaattc 179
|||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 321 atttctatttacattatagaatattattagaatctcatatttaaaataccaacaaaattc 380
Query: 180 ttttaattctcttttcattttacctaaatatggagttagtggctaat 226
|||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tttt----cttttttcattttacctaaatatggagttaatggctaat 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 997
Length adjustment: 10
Effective length of query: 590
Effective length of database: 987
Effective search space: 582330
Effective search space used: 582330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_n13.g1 MSMg01no416_n13.g1 CHROMAT_FILE:
MSMg01no416_n13.g1 PHD_FILE: MSMg01no416_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:33 2005
(509 letters)
>mm_chr18_44590768_44591678
Length = 911
Score = 609 bits (315), Expect = e-178
Identities = 352/365 (96%), Gaps = 2/365 (0%)
Strand = Plus / Minus
Query: 147 cagtgcttttacccacagtgcttttagc--cagtgcttttacccactgagccaacctgcc 204
|||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 711 cagtgcttttaccctcagtgcttttacccacagtgcttttacccactgagctaacctacc 652
Query: 205 ggtccgtctatccttaattactgtaatgaaagctgaagtgattccttcttaatggatatg 264
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 651 cgtccgtctgtccttaattactgtaatgaaagctgaagtgattccatcttaatggatatg 592
Query: 265 cctttgttagaaatgcttgcttagcccaagggatgtgtgcatcttctgctagtagtttag 324
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 591 cctttgttagagatgcttgcttagcccaagggatgtgtgcgtcttctgctagtagtttag 532
Query: 325 atgtgactaatcctaagaggcctacagattcgccagggtgatttcacctgccctgcagag 384
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 531 atgtgactaatcctaagaggcctacagattagccagggtgatttcacctgccctgcagag 472
Query: 385 cagagaagctgtgctcctaaacccatcactcttaactttctgtgctctggaacactgatc 444
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 471 cagagaagctgtgctcctaaacccatcactcttaactttctgtgctctgaaacactgatc 412
Query: 445 cttggccagctactcttgcctccttcctacctgatggatggttgctgctgtctctttttg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cttggccagctactcttgcctccttcctacctgatggatggttgctgctgtctctttttg 352
Query: 505 ataca 509
|||||
Sbjct: 351 ataca 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 911
Length adjustment: 10
Effective length of query: 499
Effective length of database: 901
Effective search space: 449599
Effective search space used: 449599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
