BAC Information

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BAC

Clone NameMSMg01-416O01
Chromosome18 (Build37)
Map Location 53,006,691 - 53,006,851
singlet/doubletsinglet
Overlap geneSncaip
Upstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, A730036E13Rik
Downstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416O01.T7 (MSMg01no416_o01.b1)MSMg01-416O01.TJ (MSMg01no416_o01.g1)
ACCAG512590AG512591
length718841
length of high quality
(start - end)		628 (60 - 687)161 (76 - 236)
definitionCHROMAT_FILE: MSMg01no416_o01.b1 PHD_FILE: MSMg01no416_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:36 2005CHROMAT_FILE: MSMg01no416_o01.g1 PHD_FILE: MSMg01no416_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGT
GTCTCGTACAGTGTTGTTAATTACAGGCATTGTGTTACATGGGTTTATTT
TTTAGGATCTATTTTTACTGACACTTCCCATTTCTTCACGCTCAGACCTG
ACCAGCTTTCGTTGTGCTGTTTGATTATGTGAATTTGACTCTTTTAGATT
CCTTAAAATCTAAATAGAATAATGTGACCTTGGACTTTTAAGGCTAGTTT
ATCTCTTGGCACAATGGTGTCAAGGTTCATCTCAGTCATTATCTCTTATG
GCGGGATTTCTTTTTTAATGGCTGGGTGCTATTCTCGTATATAACACACT
TCTGTATCAACTCACTTGTTGACTGACATTTAGATTGTTTGCATATTGTA
AATATGTCTTTAGTAACCATAGGAGGACATGTGTCTCTTCTAGATTAAAC
AGGAACAGAGAGTAGAACTGTTCTAGTTTTGCTTGTATGAGAAATCACCA
ATTGATTTCCACAGTGACTGACCTACTCTACAATATGTGCAGGTTCCAAT
ATTTTCCTATATCCTAACATCCTAGAAAATGGCTATCCTATCAAGTGTGA
TGTTAGCACTTTGTGGTTTTGATTTGCATTTTCCTGAAAATTGGTGAAGT
CGGCCAGCACTTCAGATACCCCTTGTCCTTTTATGTCTTTGTGGAAATAT
CTATTCAAGTCTTCTGTN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGAAGGCATGATGCTACTGGTCC
AGAGAGCATGCTTTGAATGCTGACATTCATTCTGTCTGGGAGAGTCAGCT
GGGATATTACGGAGATGATAGCCAGGCAAGGCTGGAAGAATGAAAGAGTG
TTTTCCTGTTGCAGTGGGAGGGAGGAATGGCATTCTNGGGTNNNAGACAG
AGTAGCATTCATAAAAGAANNNNNNNNNNNNNNNNNNNCCCNNCNCNCNN
NCCCCCCCCCTCCCCCCCCCCCCCCNNNNCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCNNCNCCCTCCCCCTTTCTCCTTTCTTTCCTCCCCCTTCCTCT
CCCCCTCCCTCCCTTTTCTTCCTCTCTTCCCCTTCTTTTTCCCCCTCCTC
CCCTTTTCCCTTTTTTTCCTTTTCCCTCTCTTTTTTTTCCCCCTTTTTTT
TCATATTTTTCTCCTCCCACTTTTCTCTACCCACTTTTCTCCTTTTTTTT
ACCCTTTTCTTTCTCTTATCACCTTTTTTTCCATTCTTTCTCCTTTCTTT
CCTTTCTTCTCCTCTATTTTTTCATCTTTCTTCTTACTATCTTTTTTCCA
CCTTTTTTTTCCCCCTCTCTTGGACCTNTCTTTTTGGACCACTTCTCCTT
TTCTTCATTAACATTTGTCCCCACATTTCTCCCATCTTCTTCATCCTTCA
ATCACCCCCCCTACTTACTTTGCCCTCAACATCTTGTCTTTCTCGCCTCC
TATTCTCTTTCGACCTCATTTACTAGGATTGAATGTTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_o01.g1 MSMg01no416_o01.g1 CHROMAT_FILE:
MSMg01no416_o01.g1 PHD_FILE: MSMg01no416_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:36 2005
         (161 letters)



>mm_chr18_53006491_53007051
          Length = 561

 Score =  311 bits (161), Expect = 1e-89
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaaggcatgatgctactggtccagagagcatgctttgaatgctgacattcattctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaaggcatgatgctactggtccagagagcatgctttgaatgctgacattcattctgt 260

                                                                       
Query: 61  ctgggagagtcagctgggatattacggagatgatagccaggcaaggctggaagaatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggagagtcagctgggatattacggagatgatagccaggcaaggctggaagaatgaaa 320

                                                    
Query: 121 gagtgttttcctgttgcagtgggagggaggaatggcattct 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtgttttcctgttgcagtgggagggaggaatggcattct 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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