NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGAAAAGGATCCGC
GGAATTCTCTCTTTTCACTAATTAAAAAGGATTAGCTATGAGGAAGTATC
ACATAGCCAGATTTTCAGTGTCTTTGTTTTATTAATATCCCTGTTACCAT
AAAGGGGACAGATAAGGTAGTGACCAGGTAAAAAGTAAGTTGACTTGTTG
AGATATAAGACTTGGCTTATGCCTGAATCAGACACTCCCTTAGAAACAAA
TAGTTAAAAACTCCATCTGCCAATGAGCCTTCCACTGTAGGTTGCTATTT
GGCTGTTGCTCTTTACTGTTTGTCTCAGGCTATGGACAGATCTGTGGATT
CTTGTCTGTCCCTGCCTGGCCTGGTTCAAAATTACCAATCTGAGTCCATA
GAATTCCTTCTGGAAAGGGGGGAAAGGCGTGGTGCCGTGGGGAGCTCACC
TCATGGTAGGTAACCAAATGACTATTCCCATCGCTGAGCTAGATATGAGC
TGGGACTCCCTTACAATCCACAGAAGGAGGCAGGGCCTCTAACAGCTGGA
AGCATCCTGGATTCACACTGGGCTCGCCAGCACCAAGTCCAGTTACTGTA
TGTTTCCCCTGCTTTCTTCTCTTGGGAAGGAATGAACAGGAACCGATTCT
TTTTATTTTTGACGACATTTCACCCATCTTCTCCCTATATTTTCCTCTAG
CCACCTGGCTATACCGATTTGCATTGATCCATCTTTCTGCTTTGTGCTCA
TCGTTN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTCCAATGTGCAGTCATAAT
TTAGGAGTTAACACCCATAGACAAATGTATGTTAATTGTAGAGTTTGTTT
TCTTTTCCCCATTGAAAGACAGAGCCTTGGGCTGTGTGCCAGTCCTGGTT
TAGTCCCTATCTGGCCACCGTTTTTCTCAAGAGTGCTGTAAGAAGGGTGG
GCATTCAAGGTTCCTTTAAGCACAATCCTTCAGCTCTGTGCCCCACTGTT
GGCTGAGGTGCAGGCTATATATATCAAGAAATCTTTGCCCAGCAGGTAAC
GAGCTGAAAGCCACTGAGAACCAGAACAAGTCGAATTTTGAGGTGCAGAG
TGTTAGAAAGGAAACTGGATTTTGATCCGTAAGAGACCCTGGAGAGTTCT
TTGAGAGGTAACTCAGGGACCATGCTCCCCAGTTTTGTGCAAAACAGATT
CAGATGTAGGAAGCACTCGGGGCTTTCCCGAGGTCACCCTGAGGGGTCAG
TTCAGTGTAGTTCTTCACCATACGGCTGCCTCTTTGGCCACCTTCCTGTG
TCTTTCTTTTAAGAGGATAATGGAGCGGATGTATCCCACCTTACCTTCAT
TTTTTTTTTTCTTTTCCTCTTTGAGCCCTTTTTTTTCTTTCCATCTCCCC
GTATATACTTTTTATTCCCTTCCCCCCCTCTTTCCTTTTTATCTCCTAAT
TTTCTCCTTTCTTCCCCN

Query= MSMg01no417_m12.b1 MSMg01no417_m12.b1 CHROMAT_FILE:
MSMg01no417_m12.b1 PHD_FILE: MSMg01no417_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:46 2005
         (247 letters)



>mm_chr18_64540183_64540829
          Length = 647

 Score =  431 bits (223), Expect = e-125
 Identities = 238/243 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaggattagctatgaggaagtatcacatagccagattttcagtgtctttgttttattaat 64
           ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 205 aaggaatagctatgaggaagtaccacatagccagatttacagtgtctttgttttattaat 264

                                                                       
Query: 65  atccctgttaccataaaggggacagataaggtagtgaccaggtaaaaagtaagttgactt 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 atccctgttaccataaaggggacaaataaggtagtgaccaggtaaaaagtaagttgactt 324

                                                                       
Query: 125 gttgagatataagacttggcttatgcctgaatcagacactcccttagaaacaaatagtta 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 gttgagatataagacttggcttatgcctggatcagacactcccttagaaacaaatagtta 384

                                                                       
Query: 185 aaaactccatctgccaatgagccttccactgtaggttgctatttggctgttgctctttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaactccatctgccaatgagccttccactgtaggttgctatttggctgttgctctttac 444

              
Query: 245 tgt 247
           |||
Sbjct: 445 tgt 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no417_m12.g1 MSMg01no417_m12.g1 CHROMAT_FILE:
MSMg01no417_m12.g1 PHD_FILE: MSMg01no417_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:46 2005
         (481 letters)



>mm_chr18_64719133_64720013
          Length = 881

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/481 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttccaatgtgcagtcataatttaggagttaacacccatagacaaatgtatgttaatt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttcgaatgtgcagtcataatttaggagttaacacccatagacaaatgtatgttaatt 622

                                                                       
Query: 61  gtagagtttgttttcttttccccattgaaagacagagccttgggctgtgtgccagtcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagagtttgttttcttttccccattgaaagacagagccttgggctgtgtgccagtcctg 562

                                                                       
Query: 121 gtttagtccctatctggccaccgtttttctcaagagtgctgtaagaagggtgggcattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttagtccctatctggccaccgtttttctcaagagtgctgtaagaagggtgggcattca 502

                                                                       
Query: 181 aggttcctttaagcacaatccttcagctctgtgccccactgttggctgaggtgcaggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggttcctttaagcacaatccttcagctctgtgccccactgttggctgaggtgcaggcta 442

                                                                       
Query: 241 tatatatcaagaaatctttgcccagcaggtaacgagctgaaagccactgagaaccagaac 300
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacataccaagaaatctttgcccagcaggtaacgagctgaaagccactgagaaccagaac 382

                                                                       
Query: 301 aagtcgaattttgaggtgcagagtgttagaaaggaaactggattttgatccgtaagagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcgaattttgaggtgcagagtgttagaaaggaaactggattttgatccgtaagagac 322

                                                                       
Query: 361 cctggagagttctttgagaggtaactcagggaccatgctccccagttttgtgcaaaacag 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggagagttctttgagaggtatctcagggaccatgctccccagttttgtgcaaaacag 262

                                                                       
Query: 421 attcagatgtaggaagcactcggggctttcccgaggtcaccctgaggggtcagttcagtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 attcagatgtaggaagcactcggggctttcccgaggtcaccctgaggagtcagttcagtg 202

            
Query: 481 t 481
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)