BAC Information

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BAC

Clone NameMSMg01-417P06
Chromosome18 (Build37)
Map Location 45,300,324 - 45,300,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309
Downstream geneLOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417P06.T7 (MSMg01no417_p06.b1)MSMg01-417P06.TJ (MSMg01no417_p06.g1)
ACCAG513409AG513410
length770759
length of high quality
(start - end)
503 (49 - 551)458 (78 - 535)
definitionCHROMAT_FILE: MSMg01no417_p06.b1 PHD_FILE: MSMg01no417_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:00 2005CHROMAT_FILE: MSMg01no417_p06.g1 PHD_FILE: MSMg01no417_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAGTTTACTTCTATACCCCATTTTTTGATTGGGTCATTTGA
TATTTTTGGTGATTAACTTCTTGAGTTCTTTATATATATTGGATATTAGC
ACTCTATTTGATGTGGGGTTAGTGAAGATATTTTTCCCAATCTGTAGGTT
GCAATTTGTCTTATTGATTATGTCCTTTGCCTTACAGAAGGTTTCCAGTT
TCATAGGGGTCCCATTTATCAATTCTTAATCTTAGAGCACAAACCATTGG
AGTTCTGTTTAGAAAATATCCCCTTGTGCCAATGAGTTTAGGCTCTTTCC
CACTTTCTCTTCTATTAGATTCAGTGTATCTGGTGATTCCACATTACATC
AATCAGAATGGCTAAGCTCAAAACCTCAGGGGACAACACATGTTGGAGAG
GATATGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAACTG
GTACAACCACTCTGGAAATCAATCTGGAGGTTCCTCAGAAAATTGGAAAT
AGATCTTCTACATGAAGACTCAGCTACGCCACTCTTAAGAATTACCAAAA
AGATGTCCCACCCATGTCTAAAGGGCAGGTGTTCCCACTATGTTCACAGC
GACCTTATTTGTGATTATCTTAAGTTGGAAACACCTTAAATGTGCCTCGA
AAGAAAAATGTTATTTTAAATAGGGTGTCCCTTTACCTTTTGGAAATCCC
CTCCCTATCTTATGAATGTG
NCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTTACTGGAGCACAAGAAT
TGAGGCTACTGCCAGGATTGAGACAGGAGGAAACTGGAGATCTTCCCATA
ATAACCCCAAAGCTTTTATGAGACTCAAGGCCATGCAGGCATTTTGTAGA
ATTTTAAGTGAAAATAATAAAATGTATTGGAAGAATGATATAAACTCAGG
AACCAGCGCTTCCATGTAGATGGCCTACCTTACTATTTTTTTCTTTCTTT
CCTCTCTTATTCCCCAGTGTATAGTTATAGTTTATAAAACACTGGAGGGG
AGAAATCAGCTCTATTTTCTCCTTTCCCCTGCAGCTCCTGATGGTGGAAT
AAAGATGTCCCTGGCTGCTTATGATTCAAAGCCAATTCAAAACATTGTTT
CCCCTCGACGATGATGATAGACACAGGGCAAATGTTCATTTTATGCCTGC
TGATGGGAATTAAGATTGATTAACTCTGCTTAATAAGGAGCCTGTAGAGC
CGAAGGTCTTTTCCTTAGTGTTTGATATGGAAAGTCTGTCTGCCTTCTGC
ATTTGGAGAATTCACCCCGTTACTGGAACAACATTTCCAGCATGTGGTAA
AGTATACTCCTTGCCCCAAAAATATTTCAAGGAATGTCCTGGGCCCAATT
AACCCTTTTTGGACCTTATACGGAGTCAAACCCAATTTCGTTCCCCCACT
TTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_p06.g1 MSMg01no417_p06.g1 CHROMAT_FILE:
MSMg01no417_p06.g1 PHD_FILE: MSMg01no417_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:00 2005
         (458 letters)



>mm_chr18_45300124_45300982
          Length = 859

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%), Gaps = 1/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatttactggagcacaagaattgaggctactgccaggattgagacaggaggaaactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatttactggagcacaagaattgaggctactgccaggattgagacaggaggaaactgg 260

                                                                       
Query: 61  agatcttcccataataaccccaaagcttttatgagactcaaggccatgcaggcattttgt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agatcttcccataataaccccaaagcttttttgagactcaaggccatgcaggcattttgt 320

                                                                       
Query: 121 agaattttaagtgaaaataataaaatgtattggaagaatgatataaactcaggaaccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaattttaagtgaaaataataaaatgtattggaagaatgatataaactcaggaaccagc 380

                                                                       
Query: 181 gcttccatgtagatggcctaccttactattttttt-ctttctttcctctcttattcccca 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gcttccatgtagatggcctaccttactattttttttctttctttcctctcttattcccca 440

                                                                       
Query: 240 gtgtatagttatagtttataaaacactggaggggagaaatcagctctattttctcctttc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtatagttatagtttataaaacactggaggggagaaatcagctctattttctcctttc 500

                                                                       
Query: 300 ccctgcagctcctgatggtggaataaagatgtccctggctgcttatgattcaaagccaat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctgcagctcctgatggtggaataaagatgtccctggctgcttatgattcaaagccaat 560

                                                                       
Query: 360 tcaaaacattgtttcccctcgacgatgatgatagacacagggcaaatgttcattttatgc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaaacattgtttcccctcgacgatgatgatagacacagggcaaatgttcattttatgc 620

                                                  
Query: 420 ctgctgatgggaattaagattgattaactctgcttaata 458
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgctgatgggaattaagattgattaactctgcttaata 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 859
Length adjustment: 10
Effective length of query: 448
Effective length of database: 849
Effective search space:   380352
Effective search space used:   380352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)