BAC Information

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BAC

Clone NameMSMg01-418B22
Chromosome18 (Build37)
Map Location 7,217,501 - 7,217,959
singlet/doubletsinglet
Overlap geneArmc4
Upstream geneKif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778
Downstream geneMpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418B22.T7 (MSMg01no418_b22.b1)MSMg01-418B22.TJ (MSMg01no418_b22.g1)
ACCAG513536AG513537
length769763
length of high quality
(start - end)
580 (47 - 626)459 (77 - 535)
definitionCHROMAT_FILE: MSMg01no418_b22.b1 PHD_FILE: MSMg01no418_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:14 2005CHROMAT_FILE: MSMg01no418_b22.g1 PHD_FILE: MSMg01no418_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGCCCATACCTAACAATGTTAAAAGCAATCTACAGCAAACCA
GTAGCCAACATGAAAGTAAATGGTGAGAAGGTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGTCCTCTCTCTCCCTACCTATTCAACATTG
TACTTGAAGTCCTAGCCAGAGCTATTAGACAACAAAAAGGAGATTAAGGG
GATAAAAACTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATA
TGTTAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGC
CTGATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCAAACAA
GTCAATGGCCTTTCTGTACACAAAGGATAAACAGTATGAGAAAAAATTAG
GGAACAACACCCTTCTCAATAGTCACAAATAATATAAAGTACCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATGCGTATGAGAAGAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGACAGGATCAATATAGTANAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATGAAAATTACAACTCAATTCTTCA
ACGAATTANAAAGGGCAATCAGCAGATTCATCTGTAATAACAAAAACCTA
GGATAGGCAAAACTTCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACAGAGCCAACTCAACCAAGCCT
GTATGAAACCAGGGATGTAGAAGTGGCTCGATGCGGGGCCTTGGCGCTCT
GGAGCTGCAGTAAGAGTCACTCGAACAAAGAAGCCATTCGTAAAGCTGGG
GGCATCCCCTTGTTGGCTCGGCTACTGAAGACTTCACATGAAAACATGCT
CATTCCAGTGGTGGGGACATTGCAAGAATGTGCATCAGAGGTGCCCAAGC
TATTCTAGGTTTTGGTTGTCTTTCCTTCCCTCCTTTTTTCTTTCATCCAT
GGTTGTTCTGTATGTGCACATGGTTATGAATGTGTACATGTGTGTTCACA
TGTGTATGGGCGTGTGCATGTGGGTACACATGCATGTGTGTGCACAATTA
AGCCAGAGTCTGATGTTGAATGTCTTAATGGATTGCTCTCCACTTTGTTT
ACCGAGGCAGTTTTTCGCTGAACCTGAGGCTTGCCACTTTGGCTCGTCTA
AACAGCTAGCTTGCCCTGGGAATCCCCTGCCCTGTCTCCCAAGTGGTGAG
AATAAAGATAGGCCTCTGTGCCTACCTGGTTTTTAATTGGGCATCGGGTA
ATTTAAATCCGCGCTCTTGTTTGTGAGCTAAGAATGTAACCCCCTTGCCG
CCGGATTTATTAAAAACCTACGCATAAAGATCCACTCTCCAATATGGTCT
ATAATTTAATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_b22.g1 MSMg01no418_b22.g1 CHROMAT_FILE:
MSMg01no418_b22.g1 PHD_FILE: MSMg01no418_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:14 2005
         (459 letters)



>mm_chr18_7217462_7218320
          Length = 859

 Score =  864 bits (447), Expect = 0.0
 Identities = 456/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagagccaactcaaccaagcctgtatgaaaccagggatgtagaagtggctcgatgcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aacagagccaactcaaccaagcctgtatgaaaccagggatgtagaagtggctcgatgcgg 439

                                                                       
Query: 61  ggccttggcgctctggagctgcagtaagagtcactcgaacaaagaagccattcgtaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggccttggcgctctggagctgcagtaagagtcactcgaacaaagaagccattcgtaaagc 379

                                                                       
Query: 121 tgggggcatccccttgttggctcggctactgaagacttcacatgaaaacatgctcattcc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgggggcatccccttgctggctcggctactgaagacttcacatgaaaacatgctcattcc 319

                                                                       
Query: 181 agtggtggggacattgcaagaatgtgcatcagaggtgcccaagctattctaggttttggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 318 agtggtggggacattgcaagaatgtgcatcagaggtgcccaagctattctaggttttgtt 259

                                                                       
Query: 241 tgtctttccttccctccttttttctttcatccatggttgttctgtatgtgcacatggtta 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 tgtctttccttccctccttttttcttccatccatggttgttctgtatgtgcacatggtta 199

                                                                       
Query: 301 tgaatgtgtacatgtgtgttcacatgtgtatgggcgtgtgcatgtgggtacacatgcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tgaatgtgtacatgtgtgttcacatgtgtatgggcgtgtgcatgtgggtacacatgcatg 139

                                                                       
Query: 361 tgtgtgcacaattaagccagagtctgatgttgaatgtcttaatggattgctctccacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tgtgtgcacaattaagccagagtctgatgttgaatgtcttaatggattgctctccacttt 79

                                                  
Query: 421 gtttaccgaggcagtttttcgctgaacctgaggcttgcc 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 78  gtttaccgaggcagtttttcgctgaacctgaggcttgcc 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)