Query= MSMg01no418_d16.b1 MSMg01no418_d16.b1 CHROMAT_FILE:
MSMg01no418_d16.b1 PHD_FILE: MSMg01no418_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:22 2005
(584 letters)
>mm_chr18_8208306_8209289
Length = 984
Score = 530 bits (274), Expect = e-154
Identities = 301/310 (97%)
Strand = Plus / Minus
Query: 5 gaattctcattttccctcttctcattacaaattaaggtttatagcaaaactgaacagtaa 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 310 gaattctcattttcattcttctcattacaaattaaggtttatagcaaaactgaacagaaa 251
Query: 65 gtatagatttctcacagatctccaaagccacagatacatggtctcctgccacacccactc 124
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtacagatttctcacagatccccaaagccacagatacatggtctcctgccacacccactc 191
Query: 125 cagtgaaaaccgtgtgacaggcctaatcacagatccccaaagccatagatacatggcctc 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 190 cagtgaaaaccgtgtgacaggcccaatcacagatccccaaagccatagatacatggcctc 131
Query: 185 ctgccacacccactccactgaaagctgcgtgacagacccaaaagcttggatgtatgtagt 244
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 130 ctgccacacccactccactgaaagccgcgtgacagacccaaaagcttggacgtatgtagt 71
Query: 245 tctgaggcaaaatgtttcatggaagctgggtatggtggcgcacacctttaatcccagcac 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 70 tctgaggcaaaatgtttcatggaagccgggtatggtggcgcacacctttaatcccagcac 11
Query: 305 ttggaaggca 314
||||||||||
Sbjct: 10 ttggaaggca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_d16.g1 MSMg01no418_d16.g1 CHROMAT_FILE:
MSMg01no418_d16.g1 PHD_FILE: MSMg01no418_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:22 2005
(503 letters)
>mm_chr18_8044690_8045592
Length = 903
Score = 830 bits (429), Expect = 0.0
Identities = 488/527 (92%), Gaps = 34/527 (6%)
Strand = Plus / Plus
Query: 1 tttggcagtatccttaggtaaaaactgttaatgaggacactctgtgatcttaactctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tttggcagtatccttaggtaaaaactgttaatgaggacactctgtgatcttaactctggc 252
Query: 61 acattcagtgggcttttaattactctgtcttgtcagcactcccatgacagaaacacaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acattcagtgggcttttaattactctgtcttgtcagcactcccatgacagaaacacaatg 312
Query: 121 tggacccaagagcttaaaccaaagagtttctctgtagatttttcagccttagtctgagtt 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 313 tggacccaagagcttaaaccaaagagtttctctgtat-tttttcagccttagtctgagtt 371
Query: 181 gaaatctgactaaaagctgggcctgagtggctgtctatggtttgagagttaccaggaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaaatctgactaaaagctgggcctgagtggctgtctatggtttgagagttaccaggaggg 431
Query: 241 tcatgaacaagtttgattgtgtcattcatgctctgatgcagctcagtccaagccttgtca 300
||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 432 tcatgaacaagtttgatggtgtcactcacgctctgatgcagctcagtccaagccttgtca 491
Query: 301 gactgattaaaaaaaaaaaa---------aactattagtaaaggaaatgaccaaacattt 351
|||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 492 gactgattaaaaaaaaaaaactattagtaaagtattagtaaaggaaatgaccaaacattt 551
Query: 352 taagtgcaataattaaagcaaaatatgagaacctctgtgtcaaaaaacccattgaagtac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 taagtgcaataattaaagcaaaatatgagaacctctgtgtcaaaaaacccattgaagtac 611
Query: 412 aatacaccagacccccccccccaaaaaaaa------------tgaacttgagagtgaaat 459
||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 612 aatacaccagacc---------aaaaaaaaaaaaaaaaaaaatgaacttgagagtgaaat 662
Query: 460 aaaaagttttctcccatgttctacttacaaacattctc---ttcagc 503
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 663 aaaaagttttctcccatgttctacttacaaacattctcctcttcagc 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
