Query= MSMg01no418_e08.b1 MSMg01no418_e08.b1 CHROMAT_FILE:
MSMg01no418_e08.b1 PHD_FILE: MSMg01no418_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:25 2005
(422 letters)
>mm_chr18_25517615_25518435
Length = 821
Score = 754 bits (390), Expect = 0.0
Identities = 414/424 (97%), Gaps = 5/424 (1%)
Strand = Plus / Minus
Query: 1 aacttgagaaccattgacttggagactgaggcaaatggatcccaagtttaagtccaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aacttgagaaccattgacttggagactgaggcaaatggatcccaagtttaagtccaagtt 669
Query: 61 caagaccactctgggctacacatacagaccctgacacaagacaaagcccaaacaagtaat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 668 caagaccactctgggctacacatacagaccctgatacaagacaaagcccaaacaagtaat 609
Query: 121 gtagaggtcaagtttttccatcagctacatggtaccaatgtgactgaatagctagtcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtagaggtcaagtttttccatcagctacatggtaccaatgtgactgaatagctagtcaga 549
Query: 181 ttaaggtcagctgttggctgaggttatgtctgctggatctcctacctcccatggactact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttaaggtcagctgttggctgaggttatgtctgctggatctcctacctcccatggactacg 489
Query: 241 gtgctttattta--actgctaactgtagcttatgctcaaatggagtacagattcaccatg 298
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtgcttta---agaactgctaactgtagcttatgctcaaatggagtacagattcaccatg 432
Query: 299 cctttcctagtggtaagtagttaagaacttcattaagaaatttcagtgaacatacatctt 358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 431 cctttcctagtggtaagtagttaagaacttcattaagaaatttcagtgaaaatacatctt 372
Query: 359 ttctctggcatttattcataatacacatatatgttgagttatagccaatattacactaat 418
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttctctggtatttattcataataaacatatatgttgagttatagccaatattacactaat 312
Query: 419 actg 422
||||
Sbjct: 311 actg 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 821
Length adjustment: 9
Effective length of query: 413
Effective length of database: 812
Effective search space: 335356
Effective search space used: 335356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_e08.g1 MSMg01no418_e08.g1 CHROMAT_FILE:
MSMg01no418_e08.g1 PHD_FILE: MSMg01no418_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:26 2005
(309 letters)
>mm_chr18_25349427_25350141
Length = 715
Score = 559 bits (289), Expect = e-164
Identities = 306/315 (97%), Gaps = 6/315 (1%)
Strand = Plus / Plus
Query: 1 ttgttacagggactgaattgtatgacttcagaaagtctttcacagtagcacgaatgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttacagggactgaattgtatgacttcagaaagtctttcacagtagcacgaatgaatt 260
Query: 61 gtttgcatagatgggaaaagcaggcaccatttatagccctgaacagtgaaaatttataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgcatagatgggaaaagcaggcaccatttatagccctgaacagtgaaaatttataaa 320
Query: 121 acattataggttttgctgaaagatggtgacagtccactctgtgcatctccttgtttacta 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 acattataggttttgctgaaagatggtgacagttcactctgtgcatctccttgtttacta 380
Query: 181 ggacctttaaggtggcaacgggggctgtgta------gctgttggctttatttttgtagg 234
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ggacctttaaggtggcaacgggggctgtgtactagtagctgttggctttatttttgtagg 440
Query: 235 aaaatatgtttctacatattcaaataattctagtcacagttgcagttctggctgaagatg 294
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aaaatatgtttcaacatattcaaataattctagtcacagttgcagttctgactgaagatg 500
Query: 295 aactctattctagag 309
|||||||||||||||
Sbjct: 501 aactctattctagag 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 715
Length adjustment: 9
Effective length of query: 300
Effective length of database: 706
Effective search space: 211800
Effective search space used: 211800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
