BAC Information

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BAC

Clone NameMSMg01-419H18
Chromosome18 (Build37)
Map Location 18,736,853 - 18,737,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419H18.T7 (MSMg01no419_h18.b1)MSMg01-419H18.TJ (MSMg01no419_h18.g1)
ACCAG514575AG514576
length760773
length of high quality
(start - end)
236 (250 - 485)464 (63 - 526)
definitionCHROMAT_FILE: MSMg01no419_h18.b1 PHD_FILE: MSMg01no419_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:03 2005CHROMAT_FILE: MSMg01no419_h18.g1 PHD_FILE: MSMg01no419_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTAAAATTGCGGCCGCGATAAGAGTCCCAAATTCTTCAGACCGCGGG
AATNAGAAATTTCCTGCTGTGGAAAGGGGACCCGCAAATATAGCTTTACA
CGAAAAACTGGGCTTGAACTTTCTCAAGAAATTCTCGACAGTCTCTCTCA
AATATAGTGGGAAATATATTTTCACAGGATGTGTTGGCCCTGGATCTTTC
TCAAGTGTAAGAGACCCTTTGGTCCCTTTCTCCTGGTAACCAAGCGGTTA
AGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTA
AAGCGGGGAGAGAGAGTTTGAGCAAAGAGGAAATATGGTACACAAAATAA
GTATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTTAGGTCAG
TAAGAATACCTGGGGAGAGATTAGAAAAAAAGAAAAGAAAAAAGATCAAT
CAGCGGAGGCTTCTAGGAGAAGGAGCCTATACTCATCACTAGGTGAGCTC
AAGGAGCCAGTTCTTAGTAGTTCTGAATCAGATGAAAAGGCTATTAGGGC
CTCGGAAGCGCTCTCCCGAGCANGTGAAGCCCCTGTACCACTAACAAAGA
TCGTCCAGGGACCTCAGGAGTCTTCCTCCATTTTTTGGCCCCAATGACTA
AACACCCAACGGGATTTTGGTGAATTCAAAAAAGCTGCCCCTCGGGGAAA
CAGTCCTTTTTTAACAAGCCCCCCGGATGGTGAAGGGCCCTAACCCCAAA
AAAAAAAAGG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGATCTCTCGAAAACTTTTAACATGAATTGTGTGGCA
TTTTCTCAAACGGATGGTGTTAATACTCTTATTAAATTCTGTAGTAATCT
TCCTTCCATAGCTAAGAATGTAACATAGTAATATCTTTGAACTTGTATAA
TCAAATGTATCTTGAAATTCAGCATTAAATGTGGCTTCATGCATGAAAAG
ATCAATGTTATGTTTCAGGCTTTGCTTACCTCTTAATTCTTCCCTTATAT
ATTTAGCCCCCTCTATATTCTCTGAACTAATTTTAGAAGCAAATATACAG
TAGAGAAGAGCAACATAATCATAGAAACACAAAAATTACTTTGTAAAATA
ATACAAGATTGCAAGAACAAGAAGTCAGATAGATAATTAAGAATCATAAA
AATAAATTTCTCTCATTTATAAATTGAATTCTATTTCCAAAAATGAGGTA
GTAAAAAAAATATATCTAATAATGAGTGTAGAGAACATTGTTGAAAAAGA
GATAGAGATAAATTTAACAAAGCTAAATTTAATATTTAACATTTATTTCT
CAGGGCATATACAGAATACATAATAGGGTTCTTTTCAGCCAAAAAAGTTA
TATTAGCAGGGCTCTTTATTTATTTTATTGCCGGGAGGTAAAAAAAATGG
GAAATGTTTTTGAGGGACCCCCCCCGGCAAAAAAAAAAAATTGCTTTCTT
TTCTTTAAAAAAGAATTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_h18.g1 MSMg01no419_h18.g1 CHROMAT_FILE:
MSMg01no419_h18.g1 PHD_FILE: MSMg01no419_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:03 2005
         (464 letters)



>mm_chr18_18736653_18737516
          Length = 864

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatctctcgaaaacttttaacatgaattgtgtggcattttctcaaacggatggtgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatctctcgaaaacttttaacatgaattgtgtggcattttctcaaacggatggtgtta 260

                                                                       
Query: 61  atactcttattaaattctgtagtaatcttccttccatagctaagaatgtaacatagtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactcttattaaattctgtagtaatcttccttccatagctaagaatgtaacatagtaat 320

                                                                       
Query: 121 atctttgaacttgtataatcaaatgtatcttgaaattcagcattaaatgtggcttcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctttgaacttgtataatcaaatgtatcttgaaattcagcattaaatgtggcttcatgc 380

                                                                       
Query: 181 atgaaaagatcaatgttatgtttcaggctttgcttacctcttaattcttcccttatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaaaagatcaatgttatgtttcaggctttgcttacctcttaattcttcccttatatat 440

                                                                       
Query: 241 ttagccccctctatattctctgaactaattttagaagcaaatatacagtagagaagagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagccccctctatattctctgaactaattttagaagcaaatatacagtagagaagagca 500

                                                                       
Query: 301 acataatcatagaaacacaaaaattactttgtaaaataatacaagattgcaagaacaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acataatcatagaaacacaaaaattactttgtaaaataatacaagattgcaagaacaaga 560

                                                                       
Query: 361 agtcagatagataattaagaatcataaaaataaatttctctcatttataaattgaattct 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 agtcagatagataattaagaatcataaaaataaacttctctcatttataaattgaattct 620

                                                       
Query: 421 atttccaaaaatgaggtagtaaaaaaaatatatctaataatgag 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttccaaaaatgaggtagtaaaaaaaatatatctaataatgag 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)