Query= MSMg01no419_j20.b1 MSMg01no419_j20.b1 CHROMAT_FILE:
MSMg01no419_j20.b1 PHD_FILE: MSMg01no419_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:13 2005
(339 letters)
>mm_chr18_21825527_21826265
Length = 739
Score = 609 bits (315), Expect = e-179
Identities = 333/343 (97%), Gaps = 8/343 (2%)
Strand = Plus / Minus
Query: 1 aatgaggaagtatagcagtgaatgtacatgtagctgaacctatagcagaattaggaaaat 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 539 aatgaggaagtatagcagtgaatgtacaggtagctgaacctatagcagaattaggaaaat 480
Query: 61 aagaaaagagggaaagacctctaataaatagcagaaataatggagtaaacacaaggacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aagaaaagagggaaagacctctaataaatagcagaaataatggagtaaacacaaggacag 420
Query: 121 gaacgaagatcttcagctcaccgtatttatgcatcaccccatctattcatgatgataggt 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 419 gaacgaagatcttcagctcaccgtatttatgcatcaccccatctgttcatgatgataggt 360
Query: 181 ttcaaacgtgtcatccctgcacaaatacagggacttcacagcatcagatctgaacataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttcaaacgtgtcatccctgcacaaatacagggacttcacagcatcagatctgaacataga 300
Query: 241 ----ttttattaaaacaaaacaaaacctaaaggaatcgaagaaacacaggatcagaggat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gggg----attaaaacaaaacaaaacctaaaggaatcgaagaaacacaggatcagaggat 244
Query: 297 acagctaagtttgaaagtacttgctgaacaaacatgagggcct 339
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acagctaagtttgaaagtacttgctgaacaaacatgagggcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_j20.g1 MSMg01no419_j20.g1 CHROMAT_FILE:
MSMg01no419_j20.g1 PHD_FILE: MSMg01no419_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:13 2005
(437 letters)
>mm_chr18_21645862_21646707
Length = 846
Score = 677 bits (350), Expect = 0.0
Identities = 420/448 (93%), Gaps = 13/448 (2%)
Strand = Plus / Plus
Query: 1 acatacacatgtgttaaatccaaacaaaaacatgcctgcacaggaaaaaaggcccctgaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 acatacacatgtgttaaatccaaacaaaaacatgcctacacaggaaaaaaggcccctgaa 260
Query: 61 cagaaacacatttgtttttctttatggtatttaggaagtggaccaaggaacagttctgtg 120
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 261 cagaaatgtatttgtttttctttatggta-tcaggaagtggaccaaggaacagttctgtg 319
Query: 121 ggtaaactgacagc-tttttgt---tttgttttgttttttgcttttttttt------aat 170
|||||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct: 320 ggtaaactgacagcttttttgtttgtttgttttgttttttgcttttttttttttttaaat 379
Query: 171 tgggaaaccatggaactactttcctggctttactatgagaactctcacaattcattttca 230
||||||| |||||||||||||| |||| ||||||||||||||| ||||||||| ||||||
Sbjct: 380 tgggaaatcatggaactactttgctggttttactatgagaactttcacaattcgttttca 439
Query: 231 acagc-ttttttcctataaaaataacatatttatagggaaaatattaaaatacatacccc 289
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acagctttttttcctataaaaataacatatttatagggaaaatattaaaatacatacccc 499
Query: 290 aaaacttacttcagtttagaagcacagtagaattgtagctgtgtctctctctgtacccaa 349
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 500 aaaacttacttcagtttagaagcacagtag-attgtagctgtgtcgctctctgtacccaa 558
Query: 350 attctgcgcagagagagctggtctcccaggagtactgacatatctaagatcataggtgag 409
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atcctgcgcggagagagctggtctcccaggagtactgacatatctaagatcataggtgag 618
Query: 410 accaccatgattgctctaatacctgccc 437
|||||||||| ||||||||||| |||||
Sbjct: 619 accaccatgactgctctaatacatgccc 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 846
Length adjustment: 9
Effective length of query: 428
Effective length of database: 837
Effective search space: 358236
Effective search space used: 358236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
