BAC Information

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BAC

Clone NameMSMg01-419M19
Chromosome18 (Build37)
Map Location 16,949,759 - 16,950,178
singlet/doubletsinglet
Overlap geneCdh2
Upstream geneLOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419M19.T7 (MSMg01no419_m19.b1)MSMg01-419M19.TJ (MSMg01no419_m19.g1)
ACCAG514815AG514816
length869794
length of high quality
(start - end)		---420 (65 - 484)
definitionCHROMAT_FILE: MSMg01no419_m19.b1 PHD_FILE: MSMg01no419_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:27 2005CHROMAT_FILE: MSMg01no419_m19.g1 PHD_FILE: MSMg01no419_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCGGGCGGGTGGCGGTCTTTCTTGCCGCGCTTTATCAAATTACGGGGCG
ACANGGTGATAACGTCTAAATGCGTTTGAGTAAGCGGGGGCTCGTGTGGT
TAGAGCGCTCGCATTAAAATATACCGGCGAACTGGTTTTCTACGGTTAGA
CGGGGGTGTGTTTGGCCGCGCCCGTATTATAATTGGCGTGCGTACTCGAT
CCGTATAACTATTTAGGGCGCCGCGCGCTGACTTTGTATTTATGCTTTTC
GTACTCTATCACTACACATAATATCGAGCGGGCGCGGCGCGCTCAATATT
CGATAAGACACGATCAAGGTAATATGGTCGTATGAAATCCATGGATTTAA
ATAGTGGTATGTGATAATGCCCTGTGATAACCGATGTTTCGAAGAAGAAA
GGAAGTTGAATTACGGGCGCCACGGTTCGCGCGGGTGGCTTTTGGTCACC
GAGAGCACTGAGCNTAAGTAGAGGTGGTGGTCGAATATGCGCGACACCGC
CGCTTTGGGTTTTTTACACGCCCGCCGCCGCGGATATACTATACAGAATA
TATTAGTACGCCTCGCAGATTAGCGTAAACGGTCGCGTCCTTATAACATC
GTCGTCGGCGAGATACCGATATATATAATAATGCGGGATCCGCTACGGAA
TATATAACAGAGATGGACATGGGTGCGTCGCCCAACGATGAGTACTGTAT
ACCGCCCTTACGCCACCGCAGAATAATATATTGTTACCGCACGCAGCGGC
CCGCGTGGGACGCACCTGAACATAATGGCACACATTTTGCGCGTTTTTGC
TGTGGTANTGACAAATAACACGCGCGCCGGTAAGTGAAGGGGCGGTTAGA
TATTGATTATTCCGTCCCG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCACAGTAGCCTAGGGAGAGGGGGTGCTTTATGTTC
CTTGTAGTTGATTCCCCCCAAGAAATTATGTAGTCCTGACTGTCTGATCT
CAGCTCTTCAGCCTCACACCACCATGTGACTGACCACGTGAATGACCTGG
ATGGTGGAATGGTGATTTCATTTGGTCTGATTCAACCCACTCTTATCTGA
CAGTGCTGGGATTGAACTCTGCTCTCTCTACACTGCATTATATCCTTAGC
CAGAACATTGACCTGTATATGTTTGCCCTTGATCTTTGAGCATTTGGCAA
GATTGCAAGTGTGTATGTAGGTGATTCTGTTGTCCTTGAGAGGACCTAAA
AAAGCTTTTCATCAATCTAGAGCCAAATAAGACAAGGCAACCATCAGTTG
AAGAAACAAGTTACAATTTTTATTACTGATAAAAATTAGGTTGCGGAAAG
TGGCTTAAATGTTTCAAATTAGTTATTCATCTGCTTCCATCTTTGACAAA
AGACCTGCATACCGGGGGATTATCCCCTATAATTCCNCCAGGATAACGGG
ATTTGGTTCTGACTTTTCCCCAAAAAAAAAATAATTGGAACTTGAATTTT
TTTTCCCCCTTATCCAACCCAACATCCCCCCAAAAAAAAAAAACCCCCCC
TTGTTTTTGTGGTCCACTCCCCTTCCCTTAAGGGAAAAAAAAAAATTCTT
TCCCAGTGCTCCCAAAATAAATTTTTTCTGGGTTCACCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_m19.g1 MSMg01no419_m19.g1 CHROMAT_FILE:
MSMg01no419_m19.g1 PHD_FILE: MSMg01no419_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:27 2005
         (420 letters)



>mm_chr18_16949559_16950378
          Length = 820

 Score =  758 bits (392), Expect = 0.0
 Identities = 413/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacagtagcctagggagagggggtgctttatgttccttgtagttgattccccccaagaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 ccacagtagcctagggagagggggtgctttctgttccttgtagttgattccccccaagaa 561

                                                                       
Query: 61  attatgtagtcctgactgtctgatctcagctcttcagcctcacaccaccatgtgactgac 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 attatgtagtcctgactgtctggtctcagctcttcagcctcacaccaccatgtgactgac 501

                                                                       
Query: 121 cacgtgaatgacctggatggtggaatggtgatttcatttggtctgattcaacccactctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacgtgaatgacctggatggtggaatggtgatttcatttggtctgattcaacccactctt 441

                                                                       
Query: 181 atctgacagtgctgggattgaactctgctctctctacactgcattatatccttagccaga 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 atctgacagtgctgggattgaactttgctctctctacactgcattatatccttagccaga 381

                                                                       
Query: 241 acattgacctgtatatgtttgcccttgatctttgagcatttggcaagattgcaagtgtgt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acattgacctgtagatgtttgcccttgatctttgagcatttggcaagattgcaagtgtgt 321

                                                                       
Query: 301 atgtaggtgattctgttgtccttgagaggacctaaaaaagcttttcatcaatctagagcc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 atgtaggtgattctgttgtccttgagaggacctaaaaaaacttttcatcaatctagagcc 261

                                                                       
Query: 361 aaataagacaaggcaaccatcagttgaagaaacaagttacaatttttattactgataaaa 420
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 aaataagacaagggaaccatcagttgaagaagcaagttacaatttttattactgataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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