BAC Information

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BAC

Clone NameMSMg01-419O15
Chromosome18 (Build37)
Map Location 29,558,916 - 29,559,254
singlet/doubletsinglet
Overlap gene4930578E11Rik
Upstream geneEG625997, BC051408, LOC100040930
Downstream geneLOC666073, Pik3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419O15.T7 (MSMg01no419_o15.b1)MSMg01-419O15.TJ (MSMg01no419_o15.g1)
ACCAG514903AG514904
length7841,272
length of high quality
(start - end)
333 (80 - 412)---
definitionCHROMAT_FILE: MSMg01no419_o15.b1 PHD_FILE: MSMg01no419_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:35 2005CHROMAT_FILE: MSMg01no419_o15.g1 PHD_FILE: MSMg01no419_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCCTCCCCAAAATTTGGGGCCGCCNAAGCGATAATATTTCTACAAGA
TACCGGGGAATTCCAGAGTTTCGCGACAAGACATAGGAGACTTGCACACG
TTCAAATGAGTGATGAGAAGAAGACACAAAAATATACCCCTAGACAAGAG
TTACTTTGCAGTTAAAACCTGCTGGAAGAGGGAAAAAATCAGATTTCGCC
AATGGAATGTGCATAACCCACGCTTGAAGAGTTTTAGTTTAATTTTCTTT
TGTTTTTGATTTTTTTTTTGGTATTTTTGGTCCTTTGTTTATTTGTTTTT
TATTGTTTCTGCATTTTCTTTGATGTTTATTTTTTCTTAATTGGGGTTTT
TCACTTTGATTTTGAGATTATAAAATAATTATGTCATTTTTCCTCTTTCC
TTTCCTCTCTCCAAACCCTCCAATATACACGACCGCTCTCTCTTTAAGCT
CATGGCCTTTTTAAAATACTGTCATCACCTGAAAAAATGTGATACCACTA
CCCTCCCATCCTAAAATAAACTGGTCACCCTGACTATGGAACCCAATTGG
ATCTTCCCCAAATGAATATTTGCTCGGCCGGCTCCACAAAATATTCCCCC
CAACCCTAACGTCCCCTCCAGGGTCCGTGTTTTTGCCCGCGTTGGTTTTT
TTCCCCCTTCCCCCCCTCCCTTTTTTTTACCTCTCTCTGCCCCGTCTTCC
CCCCCCCTTTTTTCCCTTTTTCCCTTTTTTTTTCTTTTAATAATTCCCCC
CTCCTTTCTTCCCCCTTTTATTTTTTTTCCCCCG
GGAAAGACCCCGGAGGGGGNNNNGNNNNNGGNGNNNGTGCCCCNNGAGCC
NNGNNAANGGAANANNNNANNNNGNAAGTGNNTTNNACCNAACNNGAGGG
AGAGGGGNGNNGGGGNNGGGNAGGAGAAGAGAAGAAGNNGGGGAGAGAAG
AAAGAGAGGAGGAAGAAGAAGTATTTTGGCCCCACAGAGAAGAAGGGGGA
GAGGAGAAGGAAGAAGAGAAAGAAGGAAAAGGAGAGAAGAGAGGTTATTT
GAAGAGGAGGGGAGGGGAAGTAGATATAGGGAGAGAAGGAGAGAGGTAAG
AGAGGAGAAGGAGANGAGGAGGAAGAGAGGATAGAAGAGAAGGGAGAGAT
AAAGGGGGAGAGGAGTAGTTAGGGGGAGGAGAGAGTTTTTATTTTTTGAG
TAGAGAGGGAAAGTGAGAGAGTAAGGAAGAGAGAGGGTGTNGAGAAGGGT
AGAGTTTGGGGAGAGGGAGTTTGAAGAGAAAGAAGAGGAAGATTTGTTGT
TTTTTTATGGGAAGAGAGAGGAGGGATATAGGGGGAGAATTTGAGTAGAA
GAGAGATGATTTAGGAGAGAGACCGCGCGAGAGAAGGAACGAGGAGAAGA
AAGAGAGCAGACGGAGAGGGGAGGAGGGCGTTATGAGGGAGGCGAGCCCC
CCCCCCCCCCGCCGCAAGAGAAGAGACAGGATACAAGATATGTAGGATAG
AGCGAGAGTTTATTACGAGGGGTAGTGTAGTATTAAGATATTGAAGTAGC
GGCCTGTTATTTTAATTATAATGAAAGGGAGGCTTACGTGCAAGTTATGC
GGATTGAGAAATTAAAATAATAGAGTAAGAAGTATAATGGATTACTAATG
TTGAACAATATAGTATCAACAAAATTGAAGAGATATCAATATTCAAGAAC
GATAATTAAGAGCCATTGTGTNTATCTACCTCCCTACTAAGTCTAACCAC
ACAACTAATATATACTACAAGATAATGAACGCTGTATATACTTGTACCAA
CTATCGAAGCTAACAATAATTATAATAGAGAGCGAAATAGAGCACCGCTG
AGATGTAATACCTCTATTATCATTACTAGATATTGCGAGTAGAGAATAAT
AGGATTTATATAAGTTGAGTAATCACCGTCACCGAGAGTTGATAATCGAA
TACATAATCATACCAATATAGTACAGCATAATCGGAATCACGAGATGTCC
CATATTGTACAATAACAGTCAAACTTGTACACGTGCATTATCTATTCAAC
CCATTATATGATCGCGATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_o15.b1 MSMg01no419_o15.b1 CHROMAT_FILE:
MSMg01no419_o15.b1 PHD_FILE: MSMg01no419_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:35 2005
         (333 letters)



>mm_chr18_29558894_29559627
          Length = 734

 Score =  609 bits (315), Expect = e-179
 Identities = 331/339 (97%), Gaps = 6/339 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacataggagacttgcacacgttcaaatgagtgatgagaagaagacacaaaaatataccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gacataggagacttgcacacgttcaaatgagtgatgagaagaagacacaaaaatataccc 302

                                                                       
Query: 61  ctagacaagagttactttgcagttaaaacctgctggaagaggg-aaaaaatcagatttcg 119
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 ctagacaagagttactttgcagttaaaacctgctggaagagggaaaaaaatcagatttcg 242

                                                                       
Query: 120 ccaatggaatgtgcataacccacgcttgaagagttttagtttaattttcttttgtttttg 179
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 ccaatggagtgtgcataacccacgcttgaagagttttagttgaattttcttttgtttttg 182

                                                                       
Query: 180 a-----ttttttttttggtatttttggtcctttgtttatttgttttttattgtttctgca 234
           |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttttttttttttttggtatttttggtcctttgtttatttgttttttattgtttctgca 122

                                                                       
Query: 235 ttttctttgatgtttattttttcttaattggggtttttcactttgattttgagattataa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttctttgatgtttattttttcttaattggggtttttcactttgattttgagattataa 62

                                                  
Query: 295 aataattatgtcatttttcctctttcctttcctctctcc 333
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aataattatgtcatttttcctctttcctttcctctctcc 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)