BAC Information

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BAC

Clone NameMSMg01-420A07
Chromosome18 (Build37)
Map Location 31,337,667 - 31,338,113
singlet/doubletsinglet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420A07.T7 (MSMg01no420_a07.b1)MSMg01-420A07.TJ (MSMg01no420_a07.g1)
ACCAG514983AG514984
length756727
length of high quality
(start - end)
244 (73 - 316)584 (66 - 649)
definitionCHROMAT_FILE: MSMg01no420_a07.b1 PHD_FILE: MSMg01no420_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:43 2005CHROMAT_FILE: MSMg01no420_a07.g1 PHD_FILE: MSMg01no420_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTAAACGACNCACATATTTCGTACCCGGCGGAATTCNTTGN
NCAGTTTCGAAAACCATTTTTNAATGGGGTTATTTGATTTTCTGAAGATG
GAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGG
CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT
CCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTG
GAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAA
CTTCTGGCGGAATCATTTTTCTTTACCTAAAGCTTTACTACAGAGCAATT
GTGATAAAAACTGCATGGTACTGGTATAGAGACAGAAAAGTAGACCAATG
GAATAGAATTGAAGACCCGGAAATGAACCCACACACCTATGGTCACTTGA
TCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTC
AACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGGGAAT
CGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG
AACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAAGAAGTGGGG
AAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCCTGAACAGAACAG
CAATGGCCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCCTAATGA
AACTCC
TGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCGGAAAATCTCAGCCATGCAGACTGGGGTCGGAGTACCTTTTGG
GCTACCAATCTATTTAACATCATGAAAACAGAAGAGAAAGGAGTTTATTA
TGTGTAGGATGTAATGACTCCCAGTCCTTCCCCTAACACATTCTCCCCAA
ACATATGATGAAAAATCCCCTTTTTCTTAGCAAGAAACCTTTTTAAAAAA
TCATTTTCAATGGTTTATTTATTTTTATTTTATGCAGATTGATGTTCTAC
TTTTTCCCATTATATTTTTTATTCATTCATTTTGGATTTCAAATGTTGCC
CCCTCCCAGTCCCCCCCTCACAGAGTTCCTCTTTCTCCTCTTCTCATCTG
AAGAGTATCTTCCCCCTCTCACCTTGGCACTTCAAGACTCTGCAGGGTTG
AAGTCTCTATGCACATCTCCCACTGAGGCCAGACAAGGAAGTCCAGTTGG
GGAATGGGTTCCACAGATAGGCAACAGCTTTAGGGATAGTTCCAGTTGTT
GAGCTCCAGTTTTGGGGGGACTCACATGGATACTGACCTGCACATCTGCT
ACACATGTGCTGGATGCTTTGCCCCAACCTGTGTATGCTCTTTGGTTGGT
GGTTCAGTCTCTGAGAGGCCCCAAGGGTTCAGGTTAATTGCCTCTGTTGG
TCTTCCTGTGAAGTTCCTATTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_a07.g1 MSMg01no420_a07.g1 CHROMAT_FILE:
MSMg01no420_a07.g1 PHD_FILE: MSMg01no420_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:43 2005
         (584 letters)



>mm_chr18_31337667_31338650
          Length = 984

 Score =  835 bits (432), Expect = 0.0
 Identities = 444/448 (99%), Gaps = 2/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagccatgcagactggggtcggagtaccttttgggctaccaatctatttaacatcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcagccatgcagactggggtcggagtaccttttgggctaccaatctatttaacatcatga 388

                                                                       
Query: 61  aaacagaagagaaaggagtttattatgtgtaggatgtaatgactcccagtccttccccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaacagaagagaaaggagtttattatgtgtaggatgtaatgactcccagtccttccccta 328

                                                                       
Query: 121 acacattctccccaaacatatgatgaaaaatcccctttttcttagcaagaaaccttttta 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 acacattctccccaaacatatgatgaaaagtcccctttttcttagcaagaaaccttttta 268

                                                                       
Query: 181 aaaaatcattttcaatggtttatttatttttattttatgcagattgatgttctacttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaaatcattttcaatggtttatttatttttattttatgcagattgatgttctacttttt 208

                                                                       
Query: 241 cccattatatt-ttttattcattcattttggatttcaaatgttgccccctcccagtcccc 299
           ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cccatta-attaatttattcattcattttggatttcaaatgttgccccctcccagtcccc 149

                                                                       
Query: 300 ccctcacagagttcctctttctcctcttctcatctgaagagtatcttccccctctcacct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ccctcacagagttcctctttctcctcttctcatctgaagagtatcttccccctctcacct 89

                                                                       
Query: 360 tggcacttcaagactctgcagggttgaagtctctatgcacatctcccactgaggccagac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tggcacttcaagactctgcagggttgaagtctctatgcacatctcccactgaggccagac 29

                                       
Query: 420 aaggaagtccagttggggaatgggttcc 447
           ||||||||||||||||||||||||||||
Sbjct: 28  aaggaagtccagttggggaatgggttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)