BAC Information

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BAC

Clone NameMSMg01-420K11
Chromosome18 (Build37)
Map Location 59,521,988 - 59,522,273
singlet/doubletsinglet
Overlap gene4833446K15Rik
Upstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420K11.T7 (MSMg01no420_k11.b1)MSMg01-420K11.TJ (MSMg01no420_k11.g1)
ACCAG515469AG515470
length744733
length of high quality
(start - end)
286 (321 - 606)249 (60 - 308)
definitionCHROMAT_FILE: MSMg01no420_k11.b1 PHD_FILE: MSMg01no420_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:34 2005CHROMAT_FILE: MSMg01no420_k11.g1 PHD_FILE: MSMg01no420_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTAAANGAGGACCACATTACTTACCTGGGNGGAANNNAGAAGATCC
TAACATAAACAGCCGGANNGGGAAGACAAGGAGGGATGCTTCAGAAAAGT
ATAATCTTTAATTCGGACTCGTAGTGGTAGATGAGATGAAGTCAGATAGA
GAAAGGCAAGTGTGGTGATGCAACCAGCTGAAAAGTGGGGAGCGATCCAA
GCAGAGGAATAAGTTAATAAAGGCAAGAAGCAACATAATATAGTTGGAAG
CTGTGAGTAGTTCTGTTTCATTGGAATATACTACCCATATGGTTGTAAAG
AATCCAATATTCCTCATTGTCTGATACCAAGGAGTTTTGAGCAACTGTGT
TTTAAGGCAGGGACGTAATGAGCGGATTCTAAGTCTGACGATAGTATGAC
AGATGGAGTTGAGAAAGACCAAAATGGGCAATTTCAGAAGCTACTTGAAA
TAGTCCAGGCAACAGATGATGGAAGACAGACTTAGGCACTGGCAGGAATG
GTGGAAAGAAAATACAGAGAGGTTTATCCATAAATGAAACAGACAAAACC
TAATCCAATGCTGAGTCACCCAACAAATGGGTACTTGGGACCTACTGACC
AGCCGATTCTGTCCTAAATACACAGGATTCCTGGAAAATGTGAAGAAAAG
AGGCTTATTACCAGAAAAGTGCAGAGCAAATCTCTTCATATTACAAAAGA
AATTGACCCAGATACATAGGAAGTTGTTATATCTGCCAACTGCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTCGCGAAATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCT
TTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGAGTGTCCTGGACTGGG
TGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTTTCTGT
TAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTA
GTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTGTGTTGATTTTGTTA
CCCTCATTTTTTTTTGTGGGAGACAAGCTCTCTCCTCTGAGTTTCAGTGG
TCAGAGCAGTCTCTGCAGGCAAGCTCTTCTCTTTTGGGGAAGGTGTACAG
TTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAG
GATGTTTTCCCAGAAGCTGTGTTGCTTTGTCCAGGAAGGTGGCCGGTTGT
CTGGAGCCGAATATGTCCCCGCCCTTTATTTTCTGCGACTCTCGCCCATC
TCAGAAACGGCTGTTCTTTGTTTTCCACTATTTCCCTCGTGTTTTCTGCC
CTCTGTCTATGCCCGTTTTCTTTATTTTTCTCTCCGTTTCCTTGTTTTTT
ACCTCTTTCGCTGTTTTTTTCCCGTTTTCTCTCCTTACTTTGTCTTCCTT
TCCGCTATTTTTTATCTTTCCTTTTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_k11.b1 MSMg01no420_k11.b1 CHROMAT_FILE:
MSMg01no420_k11.b1 PHD_FILE: MSMg01no420_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:34 2005
         (286 letters)



>mm_chr18_59521788_59522473
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgataccaaggagttttgagcaactgtgttttaaggcagggacgtaatgagcggattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgataccaaggagttttgagcaactgtgttttaaggcagggacgtaatgagcggattct 260

                                                                       
Query: 61  aagtctgacgatagtatgacagatggagttgagaaagaccaaaatgggcaatttcagaag 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtctgacgatagtatgacagatgaagttgagaaagaccaaaatgggcaatttcagaag 320

                                                                       
Query: 121 ctacttgaaatagtccaggcaacagatgatggaagacagacttaggcactggcaggaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacttgaaatagtccaggcaacagatgatggaagacagacttaggcactggcaggaatg 380

                                                                       
Query: 181 gtggaaagaaaatacagagaggtttatccataaatgaaacagacaaaacctaatccaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggaaagaaaatacagagaggtttatccataaatgaaacagacaaaacctaatccaatg 440

                                                         
Query: 241 ctgagtcacccaacaaatgggtacttgggacctactgaccagccga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagtcacccaacaaatgggtacttgggacctactgaccagccga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)