NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTAGATTGGATTTTGTAAATTGTTTCCTAGCGATAGTGTGAGGGA
ATTCAATGGGCTACTAAGATGAGTCTGACCAGAACAGCTTGTTTGTTGCT
CGGGAAGCTAATATAAAAGACGGGAAACAGACTTTTGTCGTTCTGAGCCT
GAGTACTTAATTATGTCCACCCTAAGTCAGCTCCAGAAACAGACACAAAT
GAAAGTTCACAAATCTGGACGTTGTCAGCAGATGACCAGACAGTGGAGAG
TTCCGTGCTCTGCAGCCTTCTCTGTTCAGCATCTCTTGCCTTCTCGAACA
GTCTAGTTGAGGAAGACAATCCACCCACCAGAGTACACTATATACAAGAG
AACTATCTACCCAGCATTTTTTGTAAAACAGTAATACCTGTGAGGGTCTT
TCTGGAATTCTGATTTCTAGGCAAATTTAAATAGCCCCATTTGTCCTTGT
AACTTTTAAAATATTTAAATCCTCAATTAAAGACAGTTTGCTCCTCCAGT
GGGTTGTAAGAGCTGAATTCTTATCACTTTTATTCCTTCACCCCAAGTAT
ATAGAAAGTTAGCATGTAAGAATGTAAATAACAGCAACAATTAGAGGATG
CTGTTTCCCATAGATACAGCAAAGTCTCCAGTCAGCTCCCCTAAAGGTGA
GTGCTTCTGAGATGTGTGCATTATCCCCATCTTGCATGCAGTCNGAAAAG
CAGCC

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTATTTTGACTAGGTTGTTTCGGGAGT
TAGCTTCCAGGACCCACTGTCACAATTTCCCCAGAGCTAGCTTCACAAGC
ATGCCATCATCGTGGGCTTGTGACAGGGCATCGACTGAGTNNNNNNTTTT
GTTCCTGGGGCTGGCGGGATAAAAATCGCGCACCGGAAATCTACTACTCG
TAGTAGGGGCGACCACGTTCTTACGCGAAATTCTTGAACAGCATTGCCAG
GGTCCTTGGGAGGGGGGCCAAAAAGGGGAAAAGTCCTCCTCTTTCTGGGA
AGGGTAAAAACTTTTGGTGGCCCCCGGGGGCGTGTGNNNNNNNNTCCTGT
CAAAAAAAAATGGGNGTTGCCTTACCCGCTCTCTTTCTTTTTTNATTTTN
AGTGTGCGCGTTAGCAGGGGGTTTTTTTTCTTGTAAGTNNNGNNGTTTTC
TTTTTATTCAAGAAGTGCACTAGAGGGGTTNCNNNNGTAAATATCCTTTC
GGGGATCAGTGGGGATTNNNNCTCCNNNTCNNNNNNNTAAGACTGGGGCC
ACGGAGGGGGCGGCNNNNNGGGGGTGTGGGGGGTGTCTTNNCCNTATATA
ATGTATNNNNNTCCTCTTCTCTATTCTTTCTTTTTCCTTTTCTCCCCTGC
CTCTCCCGCCCCCCGGCCTCGCCGCCCATCATCTTGACCTCATGNTTNNT
NTTTNTTTCTTTTTCCCTTTTTTTTGTC

Query= MSMg01no421_b02.b1 MSMg01no421_b02.b1 CHROMAT_FILE:
MSMg01no421_b02.b1 PHD_FILE: MSMg01no421_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:05 2005
         (615 letters)



>mm_chr18_39937578_39938597
          Length = 1020

 Score = 1096 bits (567), Expect = 0.0
 Identities = 601/619 (97%), Gaps = 13/619 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattagattggattttgtaaattgtttcctagcgatagtgtgagggaattcaatgggcta 65
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 820 aattagattggattttgtaaattgtttcctagcgatggtgtgagggaattcaatgggcta 761

                                                                       
Query: 66  ctaagatgagtctgaccagaacagcttgtttgttgctcgggaagctaatataaaagacgg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ctaagatgagtctgaccagaacagcttgtttgttgctcgggaagctaatataaaagacgg 701

                                                                       
Query: 126 gaaacagacttttgtcgttctgagcctgagtacttaattatgtccaccctaagtcagctc 185
           ||||||||||||||||||||||||||||||||||||||| |||    |||||||||||||
Sbjct: 700 gaaacagacttttgtcgttctgagcctgagtacttaattttgt----cctaagtcagctc 645

                                                                       
Query: 186 cagaaacagacacaaatgaaagttcacaaatctggacgttgtcagcagatgaccagacag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cagaaacagacacaaatgaaagttcacaaatctggacgttgtcagcagatgaccagacag 585

                                                                       
Query: 246 tggagagttccgtgctctgcagccttctctgttcagcatctcttgccttctcgaacagtc 305
           | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tagagagttccgtgctctacagccttctctgttcagcatctcttgccttctcgaacagtc 525

                                                                       
Query: 306 tagttgaggaagacaatccacccaccagagtacactatatacaagagaacta----tcta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 524 tagttgaggaagacaatccacccaccagagtacactatatacaagagaactaactatcta 465

                                                                       
Query: 362 cccagcattttttgtaaaacagtaatacctgtgagggtctttctggaattctgatttcta 421
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cccagcattttttgtaaaagagtaatacctgtgagggtctttctggaattctgatttcta 405

                                                                       
Query: 422 ggcaaatttaaatagccccatttgtccttgtaacttttaaaatatttaaatcctcaatta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggcaaatttaaatagccccatttgtccttgtaacttttaaaatatttaaatcctcaatta 345

                                                                       
Query: 482 aagacagtttgctcctccagtgggttgtaaga-----gctgaattcttatcacttttatt 536
           ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||
Sbjct: 344 aagacagtttgctcctccagtgggttgtaagataagagctgaattcttatcacttttatt 285

                                                                       
Query: 537 ccttcaccccaagtatatagaaagttagcatgtaagaatgtaaataacagcaacaattag 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccttcaccccaagtatatagaaagttagcatgtaagaatgtaaataacagcaacaattag 225

                              
Query: 597 aggatgctgtttcccatag 615
           |||||||||||||||||||
Sbjct: 224 aggatgctgtttcccatag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1020
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1010
Effective search space:   611050
Effective search space used:   611050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)