Query= MSMg01no421_b06.b1 MSMg01no421_b06.b1 CHROMAT_FILE:
MSMg01no421_b06.b1 PHD_FILE: MSMg01no421_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:06 2005
(526 letters)
>mm_chr18_38219200_38220123
Length = 924
Score = 930 bits (481), Expect = 0.0
Identities = 499/511 (97%), Gaps = 11/511 (2%)
Strand = Plus / Minus
Query: 14 gaattctcagtatcaagtcactgctgcctccctggatccttggaccacctccagtaccag 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattctcagtatcaagtcactgctgcctccctggatccttggaccacctccagtaccag 501
Query: 74 cagactgctgagtggggagcactacctcccggggagttgggaagagggttggcatctgtc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagactgctgagtggggagcactacctcccggggagttgggaagagggttggcatctgtc 441
Query: 134 actgaagaatactgcaggtgccagagggcccccatactcaggagagacatgcaaatccag 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actgaagaatactgcaggtgccagagggcccccatactcaggagagacatgcaaatccag 381
Query: 194 ggtaaactgctgggagacgacttgaactgggagtcactgaagaagtggatggaacagcag 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtaaactgctgggagacgacttgaactgggagtcactgaagaagtggatggaacagcag 321
Query: 254 ctgacttaggggataccccagggcttggagccttcatttccactcttgtccagctatgga 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgacttaggggataccccagggcttggagccttcatttccactcttgtccagctatgga 261
Query: 314 cttcccacccttcctctgggaaccagaacccctgccccctccctccccccccccaaaaaa 373
|||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 260 cttcccacccttcctctgggaaccagaacccccgccccc-------ccccccccaaaaa- 209
Query: 374 aaagaatagctgtagcaccattttggctcaggacttgccctgattgcttcccacattgat 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ---gaatagctgtagcaccattttggctcaggacttgccctgattgcttcccacattgat 152
Query: 434 ggatgaatgtggttctccaaattggaaaaataactaatgtacagctctcagaccctgctg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ggatgaatgtggttctccaaattggaaaaataactaatgtacagctctcagaccctgctg 92
Query: 494 cctatgggtggagggggttcttctgggttaa 524
|||||||||||||||||||||||||||||||
Sbjct: 91 cctatgggtggagggggttcttctgggttaa 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 924
Length adjustment: 10
Effective length of query: 516
Effective length of database: 914
Effective search space: 471624
Effective search space used: 471624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_b06.g1 MSMg01no421_b06.g1 CHROMAT_FILE:
MSMg01no421_b06.g1 PHD_FILE: MSMg01no421_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:06 2005
(494 letters)
>mm_chr18_38061375_38062268
Length = 894
Score = 932 bits (482), Expect = 0.0
Identities = 491/494 (99%)
Strand = Plus / Plus
Query: 1 catggaggctcatatatgtggcagtcagcaaagtacattacagtacggaaaggagagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggaggctcatatatgtggcagtcagcaaagtacattacagtacggaaaggagagcca 260
Query: 61 aagctttgaacctcagtttcttttccctctgggggaactgccaacaaaggagaaacaatg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctttgaacctcagtttcttctccctctgggggaactgccaacaaaggagaaacaatg 320
Query: 121 aggatctagatgagggctggagtcaaaaccggggaaactctcaccttgttgttcatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatctagatgagggctggagtcaaaaccggggaaactctcaccttgttgttcatgaaa 380
Query: 181 gccttcaaacagcggataatctcatgctggtttcggctgtcgtagtttctgcacacagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccttcaaacagcggataatctcatgctggtttcggctgtcgtagtttctgcacacagaa 440
Query: 241 aacaggatcagcgaagtcccttcacattataatgcatctttccttatgattgttcaatct 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaggatcagcgaagtccctttacattataatgcatctttccttatgattgttcaatct 500
Query: 301 tgcaaagcaggacagtagcaaagcctgcaactagtagctgagtagaatctaacaggcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcaaagcaggacagtagcaaagcctgcaactagtagctgagtagaatctaacaggcagt 560
Query: 361 tatgaatgcagcccagcatgctcaaagacgacactgcattgtgatgtcaaaggttgtcca 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 tatgaatgcagcccagcatgctcaaagacgacactgcactgtgatgtcaaaggttgtcca 620
Query: 421 gccctacagtacagtacttggcccagaaacactaacaaaagtaatcagctggctaatacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccctacagtacagtacttggcccagaaacactaacaaaagtaatcagctggctaatacc 680
Query: 481 attgtaatctaaga 494
||||||||||||||
Sbjct: 681 attgtaatctaaga 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
