BAC Information

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BAC

Clone NameMSMg01-421O16
Chromosome18 (Build37)
Map Location 70,856,839 - 71,024,077
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421O16.T7 (MSMg01no421_o16.b1)MSMg01-421O16.TJ (MSMg01no421_o16.g1)
ACCAG516431AG516432
length755759
length of high quality
(start - end)		615 (75 - 689)595 (74 - 668)
definitionCHROMAT_FILE: MSMg01no421_o16.b1 PHD_FILE: MSMg01no421_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:15 2005CHROMAT_FILE: MSMg01no421_o16.g1 PHD_FILE: MSMg01no421_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,856,839 - 70,857,451)(71,023,483 - 71,024,077)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCAGAGAATCCGCGG
AATTCACTGTTTATTCCTGTGCTCCATTTTTTCTAAAACTAGGTTATTTG
AGTTGTTGATGTTCAACTTCTTAAGCTTTTTATACATTTTGGATATTAGT
CCTCTGTGAGATGTAGGTGAGTGAAGATCCTTTCAGCCTGCTTTCTTATA
GAGCCTAGGGCCACCAACCCAGTGGCGTCCTCTCCCACAGAGGGCTGGGT
CTGCTCTTTTCGTTCAGTAATTAAGAAAATGTCCGACCAGTTTGTCTGAT
CAAGCCTTATGGAGGCATTTTTCTCATCTGAGATTCCCTCCTCTCAGATG
ACTCTAACTTGTGTCAAGTTGATGTAAAACTAGCCTGGGTATGGACAGTC
TGTGCAGTTAAGCAGTGCCTCACTCCTTGCCATGCACTGTCAGCACATGT
AGCTCATAGGGCTGGCATCTGAGTGGGCTCTAAAGACCAGTGCTTTTGGG
TTGGGAACTAATAAAGTAGTTCAAATTGGAAATTACCTAATATATCCACC
ATACCCACACAGCATTCTCCATTGTGGTTTCAATAAACTTTAAGCTTTTC
TTTTTTTTTAAACCTTCCAGATATACCAGGGCTTATTAATCAGTCTGTCG
CTCCATAGATGTTGTACTGGGAAACCAATATCATATTTGCCTTTTTAGAA
GTACTGTGAGCTTTCTTGTTATAAGTCATACAAGTCAAAGCTCTTGAGAC
TTCCN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGTCTCAAATATGAATGAGAACCT
AAGGGAAGGATTCAGGATTCTCCTCCCATCTATAGACCTATATACCAATG
TTTTCTTAAGCCTCCTATAATTCCCAGGACTAGGTGATGCCTGGATGATA
AAGGAGAGAAGTAGTACGGATACTTGAAAATTCATATTAACTCTTTAATT
AGAGTTTCTTAGATGCTGTTTCAAATTAGGATAATTTTAAGTTATTAGAT
GTGACAACTATATAAACAGCAAATGCTTTAATTAGAGAGTTGTTTGTGTA
ATGGGGTAAAATCCACTGGAAGCATCAATCTGTCACTCTGCATTAACTTT
CTGCAGCAGACATTCCCTCTGGAGCTCTGAACCTCAGCCGCAAGCCTGCA
TCTATCATCCTCCTTCAGAAATTTAATCCTCACCTGTTTATGGCCAGGTC
TCTGCTCTTTAAAGAATAAAGATCAGGATGAGCAACTCCAGCTGAATTCT
CATTCAAATTCATATCGACTCCTAGTGTTGCTGAATTTGTTTAATGTATC
ACTAAGCACATTCTTTCCAGACTTTATAAATACCCTGCCATGTTATTGAT
GAAATAAAAGTTTTGTAAGTGTTTCAGCATTCGAGGTGATTTATAAAAAA
AAAATAGAAAAAAGACAATATCCAGCCTGAGAGCTTCCCTCAAGTTCTCA
TTACCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_o16.b1 MSMg01no421_o16.b1 CHROMAT_FILE:
MSMg01no421_o16.b1 PHD_FILE: MSMg01no421_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:15 2005
         (615 letters)



>mm_chr18_70856637_70857651
          Length = 1015

 Score = 1123 bits (581), Expect = 0.0
 Identities = 605/613 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttttttctaaaactaggttatttgagttgttgatgttcaacttcttaagctttttataca 62
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 203 ttttttctaaaactaggttatttgagttgttgatgttcaacttcttgagttttttataca 262

                                                                       
Query: 63  ttttggatattagtcctctgtgagatgtaggtgagtgaagatcctttcagcctgctttct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttggatattagtcctctgtgagatgtaggtgagtgaagatcctttcagcctgctttct 322

                                                                       
Query: 123 tatagagcctagggccaccaacccagtggcgtcctctcccacagagggctgggtctgctc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatagagcctagggccaccaacccagtggcgtcctctcccacagagggctgggtctgctc 382

                                                                       
Query: 183 ttttcgttcagtaattaagaaaatgtccgaccagtttgtctgatcaagccttatggaggc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttttcgttcagtaattaagaaaatgtccgaccagtttgtctgatcaagccttatggaggc 442

                                                                       
Query: 243 atttttctcatctgagattccctcctctcagatgactctaacttgtgtcaagttgatgta 302
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atttttctcaactgagattccctcctctcagatgactctaacttgtgtcaagttgatgta 502

                                                                       
Query: 303 aaactagcctgggtatggacagtctgtgcagttaagcagtgcctcactccttgccatgca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaactagcctgggtatggacagtctgtgcagttaagcagtgcctcactccttgccatgca 562

                                                                       
Query: 363 ctgtcagcacatgtagctcatagggctggcatctgagtgggctctaaagaccagtgcttt 422
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgtcagcacatgtagttcatagggctggcatctgagtgggctctaaagaccagtgcttt 622

                                                                       
Query: 423 tgggttgggaactaataaagtagttcaaattggaaattacctaatatatccaccataccc 482
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgggttggaaactaataaagtagttcaaattggaaattacctaatatatccaccataccc 682

                                                                       
Query: 483 acacagcattctccattgtggtttcaataaactttaagcttttctttttttttaaacctt 542
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 683 acacagcattctccattgtggtttcgataaactttaagcttttttttttttttaaacctt 742

                                                                       
Query: 543 ccagatataccagggcttattaatcagtctgtcgctccatagatgttgtactgggaaacc 602
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 743 ccagatataccagggcttattaatcagtctgtcactccatagatgttgtactgggaaacc 802

                        
Query: 603 aatatcatatttg 615
           |||||||||||||
Sbjct: 803 aatatcatatttg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no421_o16.g1 MSMg01no421_o16.g1 CHROMAT_FILE:
MSMg01no421_o16.g1 PHD_FILE: MSMg01no421_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:15 2005
         (595 letters)



>mm_chr18_71023283_71024277
          Length = 995

 Score = 1120 bits (579), Expect = 0.0
 Identities = 591/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggtctcaaatatgaatgagaacctaagggaaggattcaggattctcctcccatctat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 795 tttggtctcaaatatgaatgagaacctaagggaaggattcaggattctcctcccatttat 736

                                                                       
Query: 61  agacctatataccaatgttttcttaagcctcctataattcccaggactaggtgatgcctg 120
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 735 agacctatataccaatgttttcttaagcctcctataactcgcaggactaggtgatgcctg 676

                                                                       
Query: 121 gatgataaaggagagaagtagtacggatacttgaaaattcatattaactctttaattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gatgataaaggagagaagtagtacggatacttgaaaattcatattaactctttaattaga 616

                                                                       
Query: 181 gtttcttagatgctgtttcaaattaggataattttaagttattagatgtgacaactatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtttcttagatgctgtttcaaattaggataattttaagttattagatgtgacaactatat 556

                                                                       
Query: 241 aaacagcaaatgctttaattagagagttgtttgtgtaatggggtaaaatccactggaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaacagcaaatgctttaattagagagttgtttgtgtaatggggtaaaatccactggaagc 496

                                                                       
Query: 301 atcaatctgtcactctgcattaactttctgcagcagacattccctctggagctctgaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atcaatctgtcactctgcattaactttctgcagcagacattccctctggagctctgaacc 436

                                                                       
Query: 361 tcagccgcaagcctgcatctatcatcctccttcagaaatttaatcctcacctgtttatgg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcagctgcaagcctgcatctatcatcctccttcagaaatttaatcctcacctgtttatgg 376

                                                                       
Query: 421 ccaggtctctgctctttaaagaataaagatcaggatgagcaactccagctgaattctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccaggtctctgctctttaaagaataaagatcaggatgagcaactccagctgaattctcat 316

                                                                       
Query: 481 tcaaattcatatcgactcctagtgttgctgaatttgtttaatgtatcactaagcacattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaaattcatatcgactcctagtgttgctgaatttgtttaatgtatcactaagcacattc 256

                                                                  
Query: 541 tttccagactttataaataccctgccatgttattgatgaaataaaagttttgtaa 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttccagactttataaataccctgccatgttattgatgaaataaaagttttgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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