Query= MSMg01no422_o02.b1 MSMg01no422_o02.b1 CHROMAT_FILE:
MSMg01no422_o02.b1 PHD_FILE: MSMg01no422_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:25 2005
(553 letters)
>mm_chr18_63425342_63426296
Length = 955
Score = 984 bits (509), Expect = 0.0
Identities = 541/553 (97%), Gaps = 6/553 (1%)
Strand = Plus / Minus
Query: 5 gaattcttgcagcttctcttactctgggcaaaagccaaaagtcatggacaaaccagtgag 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattcttgcagcatctcttactctgggcaaaagccaaaagtcatggacaaaccagtgag 696
Query: 65 ctaactgaaggatgagtagggtctgtgaacaaaggcagacatgctaaagcatgcagagca 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 695 ctaactgaaggatgagtagggtctgtgaacaaaggcagacatgcgaaagcatgcagagca 636
Query: 125 ggtactggaaaactgtcattgaaccaggaaatctacaggaaa-ctaggctgtcacagagc 183
||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct: 635 ggtactggaaaactgtcatcgaaccaggaaatctaca-gaaagctaggctgtcacagagc 577
Query: 184 taacttgtacggataatgcaagctaatacagacaagaacacgtgctttgctgtttcaggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 taacttgtacggataatgcaagctaatacagacaagaacacgtgctttgctgtttcaggg 517
Query: 244 cctctgggctattttcttttccagatgcagagatagcatcttgaggcctccaagctaggc 303
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cctctgggctatttt-ttttccagatgcagagatagcatcttgaggcctccaagctaggt 458
Query: 304 caccatcccagaagctatagtttgggacattctatacctaacccagcaaaactatcctat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caccatcccagaagctatagtttgggacattctatacctaacccagcaaaactatcctat 398
Query: 364 ttaatgaggacacatccaaatcaacaagagtttgccactcagtaagtgatggatggggaa 423
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttaatgaggacatttccaaatcaacaagagtttgccactcagtaagtgatggatggggaa 338
Query: 424 ttcctcatagaagaagtatt---catttacttactctcagattcatccatctccagaccc 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttcctcatagaagaagtattattcatttacttactctcagattcatccatctccagaccc 278
Query: 481 agcatccttcatctgacatgatgctcaagcactttcagagtttggaatgctttagattag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agcatccttcatctgacatgatgctcaagcactttcagagtttggaatgctttagattag 218
Query: 541 agatgcttaacca 553
|||||||||||||
Sbjct: 217 agatgcttaacca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_o02.g1 MSMg01no422_o02.g1 CHROMAT_FILE:
MSMg01no422_o02.g1 PHD_FILE: MSMg01no422_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:25 2005
(563 letters)
>mm_chr18_63237859_63238821
Length = 963
Score = 1058 bits (547), Expect = 0.0
Identities = 559/563 (99%)
Strand = Plus / Plus
Query: 1 atcacctcctatcatgtgaccacaaatggggaaaaggagtggaaaagattctcttaacac 60
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 atcacctcctatcttgtgaccacaaatagggaaaaggagtggaaaagattctcttaacac 260
Query: 61 tgtaaaaccaagagtggcaagcagtcattgaagcctgaacttgcagtgtcttggctgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaaaaccaagagtggcaagcagtcattgaagcctgaacttgcagtgtcttggctgggt 320
Query: 121 ctttgctgggtcttttaaggaccaccatgtggactgtttattctcacactgaaaccacaa 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgctgggtcttttgaggaccaccatgtggactgtttattctcacactgaaaccacaa 380
Query: 181 gtatgttatgtagtgaaaaccacttactgacagtatattcttcatggtgatcacaaacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatgttatgtagtgaaaaccacttactgacagtatattcttcatggtgatcacaaacac 440
Query: 241 gttgtatgcaatcagccagtcccagtaacgaaggatgctcttgatgggcttcagcagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgtatgcaatcagccagtcccagtaacgaaggatgctcttgatgggcttcagcagcag 500
Query: 301 atcccctccaaagagcaggaaatagaaacaggccaccaagtagcccatgcaaaatatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcccctccaaagagcaggaaatagaaacaggccaccaagtagcccatgcaaaatatgct 560
Query: 361 gatcctggttgttcccgtaatgaagatgatggtgaggacgaaccagaagaggtagctgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatcctggttgttcccgtaatgaagatgatggtgaggacgaaccagaagaggtagctgaa 620
Query: 421 gatgatcactttggacatgtccaagtaagatctgcaaaacagaccccggggccatgcata 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gatgatcactttggacatgtccaagtaagatctgcaaaacagaccccggggccatgcaaa 680
Query: 481 gacaacagcaacacaggcaaaaccaagagctcatctttaaggagggaaaccttttttcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaacagcaacacaggcaaaaccaagagctcatctttaaggagggaaaccttttttcaa 740
Query: 541 cattgaactacccacattatgca 563
|||||||||||||||||||||||
Sbjct: 741 cattgaactacccacattatgca 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
