BAC Information

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BAC

Clone NameMSMg01-423E18
Chromosome18 (Build37)
Map Location 3,547,747 - 3,548,186
singlet/doubletsinglet
Overlap geneLOC100039273
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi
Downstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E18.T7 (MSMg01no423_e18.b1)MSMg01-423E18.TJ (MSMg01no423_e18.g1)
ACCAG517486AG517487
length933748
length of high quality
(start - end)
---448 (64 - 511)
definitionCHROMAT_FILE: MSMg01no423_e18.b1 PHD_FILE: MSMg01no423_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:57 2005CHROMAT_FILE: MSMg01no423_e18.g1 PHD_FILE: MSMg01no423_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCCTCCTCCTCCCTCTCTCCTACTCACATTACGCTATATCATCCNCC
TCCCCAAAAAGAAAAAAATTTGGGCGGGGGCCCGGCCCTTAAAATAAACG
GAAAATTCCCAACCTTTATTTTTCCCCCCCCAAGAAAAAGGGGGAAATCC
CCCGGGGCGGGGGGAAAAAAAAAACATCCCCCCTTTGGGGGGGGGTTTTT
TTTTTCCCCCCCCCCCCCCCCGGGGGAAAAAAACGCCCCCAATTTTTTAA
AAGGGGGGGGTTAAATTGGGGAAATTTTCCCGGGGGGGGGCCCCCCCCCC
CCTCCCCGGGAGAGAGGGCCCCTTATAAAAAAATTAGAGGGGGGGAGAAA
AAAAAAACACCCCCCCCCCCCTTGGCGGGGGGTATTTTTGACGGAAAAAG
GCGCGGGAAAAAAAAAATCTCCTTTTCTTTCCCCAAAAAAAGGGGGGGGG
GGGGGGGGGGCGCGCCCCCCCCCTTGGGGGGAGAAAAAAAAAAAAAAAAA
AAGAAGGGGGGGGGGGTTTTTTTGGGCGTGCCGCCCCAAAAAAAAAACAA
AAAAAAAATGGTGGGGGAAATAAATATAATGACCAACATAAGGCATACCA
GCGCCCCCCGCCCCCCCTCCCCCTTTTGTNGTGTTTTNNTTTTTTTTTCT
GTCTTTCCCCCGCCGCCGTTCTGAAACAGACCAAAAAAGAGCCCGGGCGG
CGCGGGGGGGGGGGGGATATATTTTATTTTTTTTATACAAAAGAAAAAAA
AAATATCCCTCCCCCCCGCTGCCTCTATTTTGTGTTATAAAACAAAAANA
CGAGNACAAACCGCGAGCGGGGCGCCGCCTTGATTTTTTCCACCCCCCCC
ACCCCCATATTTCTGTCTACCCATTTTACCTCCCTTTTATGTACCGCCAT
ACATATCCCCTTATCCCCCATTTTTAACCACCG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTCCACAGCCCAGGAGTGATCCCTCTGTGTCAACCT
CCTATGTGCTGAATCTACAAGTGTGAGCTGGCATGCCTTGCTGGCTCAGG
CTATCTTTAAAACTATAAATCTTCTAGCAGAGAAGCTGGCCACAAAGGAA
GACAGAGAATGCCTAAATGGAAGATGAGGGTTTGGGGGCAGAGCATTGAG
GTAGAGCATTTGCTTAGCATGTGTGATCTGGGATCCTTTCTCAGCACTGA
CAGAGGTAGGTATTAGACTTTTAACTGTGAACTTCAAGGCCATAAACCTA
TGTTCTTCCTTTTTGTAGGCTTAATGTTAAAAAAGAAAATCATTTGTGAA
CTGAACCCTCACAGCCTGGATTGGCCTGGGTGGAATGATCTGAGAGGGGC
AAGCAAAGCCAGATGCCTCCCTGTACACTTAATGAAGTGTTCTCCCCCTG
TTATCTAAATGGCGAGTGAATAGGAATCCCGGGATACAGACAAATCACTA
AAGAGGCTGGGGGAAAATAGTGTGCTGCTTCCCACTAAAGCATGGGAACT
CAGTGAATGTCTTTATAAGAATTTTCCTGCCCGTGAATTCTCCCTGGCTT
TGTCCACCGGAAAATCAGACACACCCTCCCTATCAACCTGAATTAAATTT
CCTCTCCCTCGCCAAAGTGCCCTTTCTTTCCCCCGTATCTTTCCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e18.g1 MSMg01no423_e18.g1 CHROMAT_FILE:
MSMg01no423_e18.g1 PHD_FILE: MSMg01no423_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:57 2005
         (448 letters)



>mm_chr18_3547547_3548394
          Length = 848

 Score =  816 bits (422), Expect = 0.0
 Identities = 438/448 (97%), Gaps = 8/448 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccacagcccaggagtgatccctctgtgtcaacctcctatgtgctgaatctacaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actccacagcccaggagtgatccctctgtgtcaacctcctatgtgctgaatctacaagtg 260

                                                                       
Query: 61  tgagctggcatgccttgctggctcaggctatctttaaaactataaatcttctagcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagctggcatgccttgctggctcaggctatctttaaaactataaatcttctagcagaga 320

                                                                       
Query: 121 agctggccacaaaggaagacagagaatgcctaaatggaagatgagggtttgggggcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctggccacaaaggaagacagagaatgcctaaatggaagatgagggtttgggggcagag 380

                                                                       
Query: 181 cattgaggtagagcatttgcttagcatgtgtgatctgggatcctttctcagcactgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgaggtagagcatttgcttagcatgtgtgatctgggatcctttctcagcactgacag 440

                                                                       
Query: 241 aggtaggtattagacttttaactgtgaacttcaaggccataaacctatgttcttcctttt 300
           ||| ||||||||||||||||||||||||||||||        ||||||||||||||||||
Sbjct: 441 aggcaggtattagacttttaactgtgaacttcaa--------acctatgttcttcctttt 492

                                                                       
Query: 301 tgtaggcttaatgttaaaaaagaaaatcatttgtgaactgaaccctcacagcctggattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtaggcttaatgttaaaaaagaaaatcatttgtgaactgaaccctcacagcctggattg 552

                                                                       
Query: 361 gcctgggtggaatgatctgagaggggcaagcaaagccagatgcctccctgtacacttaat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gccagggtggaatgatctgagaggggcaagcaaagccagatgcctccctgtacacttaat 612

                                       
Query: 421 gaagtgttctccccctgttatctaaatg 448
           ||||||||||||||||||||||||||||
Sbjct: 613 gaagtgttctccccctgttatctaaatg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)