Query= MSMg01no423_g14.b1 MSMg01no423_g14.b1 CHROMAT_FILE:
MSMg01no423_g14.b1 PHD_FILE: MSMg01no423_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:05 2005
(249 letters)
>mm_chr18_39491923_39492571
Length = 649
Score = 437 bits (226), Expect = e-127
Identities = 239/244 (97%), Gaps = 2/244 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgcttgaccctggaccttccaattacaggttcaatgttctttctgctgaat 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcttgaacctggaccttccaattacaggttcaatgttctttctgctgaat 263
Query: 64 tggcaccaagaaaagcagccttgtctttattgtgtgaggatgcaaatgtaggaaactatg 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 tggcaccaagaaaagcagccttgtctttattgtgtgaggatggaaatgtaggaaactatg 323
Query: 124 ggcccatctgaggtttttctctctgtactagcctagccttacttcattcctcaaagaccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcccatctgaggtttttctctctgtactagcctagccttacttcattcctcaaagaccc 383
Query: 184 ctggagtgcacctggcgggtgtgtgtgtgt--ctgtgtgtgtgtgtgtgtgtgtgtgtgt 241
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 384 ctggagtgcacctggcgggtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgt 443
Query: 242 gtgt 245
||||
Sbjct: 444 gtgt 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no423_g14.g1 MSMg01no423_g14.g1 CHROMAT_FILE:
MSMg01no423_g14.g1 PHD_FILE: MSMg01no423_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:05 2005
(495 letters)
>mm_chr18_39626458_39627351
Length = 894
Score = 911 bits (471), Expect = 0.0
Identities = 489/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Minus
Query: 1 tgtgactctgtgttatactgaagactttggggaaaggcgcattcattccctgccagtcac 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgtgcctctgtgttatactgaagactttggggaaaggcgcattcattccctgccagtcac 635
Query: 61 aaagcattgtaagaaggtgccatgtttataggagcaggaaatttctttgggatttaatca 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 -aagcattgtaagcaggtgccatgtttataggagcaggaaatttctttgggatttaatca 576
Query: 121 agattcttccttttctagaaaataacttggagaaagcttccagaaatacatcttttattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agattcttccttttctagaaaataacttggagaaagcttccagaaatacatcttttattc 516
Query: 181 cattttcttttgtgactcttttaagatgtaaaggtgtctagcctgtggtgttgtcagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cattttcttttgtgactcttttaagatgtaaaggtgtctagcctgtggtgttgtcagact 456
Query: 241 gtgggtttaactgaagcacatctgagtttaaagtacaatattctgttcactgcctggcaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 455 gtgggtttaactgaagcacatctgagtttaaagtacaatattctgttcactgcccggcaa 396
Query: 301 agtgttcgtccagatttgcctttcaacctggtcgtcgtactttacccctgttccgcgtgt 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agtgtccgtccagatttgcctttcaacctggtcgtcgtactttacccctgttccgcgtgt 336
Query: 361 aggccatgttgctttagactgctgggttttgctttgtttctggttcactagagttcagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aggccatgttgctttagactgctgggttttgctttgtttctggttcactagagttcagga 276
Query: 421 tgaacgttttcaggtctcctacagtggtggctttcagcctgtggtggagaggagtggcca 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 275 tgaacgttttcaggtctcctacagcggtggctttcagcctgtggtggagaggagtggcca 216
Query: 481 caggccatgtgtttc 495
|||||||||||||||
Sbjct: 215 caggccatgtgtttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
