BAC Information

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BAC

Clone NameMSMg01-423I08
Chromosome18 (Build37)
Map Location 27,183,426 - 27,184,025
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG665977, EG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I08.T7 (MSMg01no423_i08.b1)MSMg01-423I08.TJ (MSMg01no423_i08.g1)
ACCAG517657AG517658
length740730
length of high quality
(start - end)
547 (55 - 601)600 (62 - 661)
definitionCHROMAT_FILE: MSMg01no423_i08.b1 PHD_FILE: MSMg01no423_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:13 2005CHROMAT_FILE: MSMg01no423_i08.g1 PHD_FILE: MSMg01no423_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACCTTTC
TACAAAGCTCTCTAAGTGGATAGATAACTCTGTAATCCTTTCTCTCACAA
GAAAATTGAGTGAAAATTTTGAGTTCTCAGGTTTTCCCCCAATTTTTCTC
AAAATGGTATACATGAAGACTTTGAAACAAAACCAGAAAACCCCTCTAGG
AGCAAGGTAAGAGACTACCTAGTAGCAGTAGTTGCTTTTTTATTGAAATC
CTTAAACAACATTGACAACAAATCAAGACCTGCCTTTTTCTCTACTACAT
TATTTTTGAAGTTATCCATTGGGCACTATCTATAGGCTTAGATTTTTCTC
TAAATCTACTTTATTTAGGGTTCTTAAACAATTCAACCTCTTTTTCCTAT
AAGCCTTTTTTTCCTCCTTCCACTGATTGGTAGAATAGAAGGGAGACTGA
AGAATTTAAGAATCCTAAATAAAGTAGGTTTATAGATAANATTATTCCTA
TTAAAGGTCTGGGCAGATGTCCTGCAGACTTTGAGACCTCAGAAGGCAAC
CGAGACTACTATAACCAGCTAAGCTTTCAATCATGATAGATGGAAAAGTG
AGATATTTCTTCTCATCTTTCATATATAAAGAATAATATATCAGTCCTGA
CGTATGTATAATTTATCAATTACCAAAGAGGTCAAATCTTTATATAATTG
GAGAAGAAGGGGTTTCTATGGTAGAAACCTAAATATTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAATCTAGATCAGAGTCACAGAGTCATCAGAGTCTGCCTAT
TCCTCCTGGATGCTCTTATTTAAAGTGTACAGCACCACAAAGAGCCTGAT
ATTTATATTTTCATTTCTTTTTTTGCTTCATGTATTAGGTGAAGTCTATA
ATTTTACCTGTGTAATAAAAGCTTAGTTGTTTTTTCTTTATTATAAATAT
CTTTAAAACTGTTTTATTTCTCACCTGATTTTCTTTCTCCACTATTGACC
ATAATTGTCCTGTAATAACAGAAACAGAAAATAAAGGGTCTTTTATTATG
CTGAAAGATGACCTTACTGTTTATATTTCTGCTCTAATTGCTTCTCCTCC
CCATCTTTTCCACTGATACATAAACTATTTCCAGTAATCACAGAAAGGCT
TAAATTTTCTTCAAAATCTATGATCTTCCACCAATTCACCATGAGATATT
TTTGTATGTTTCTGAATGTCTGATATGCAGGATACCAAAGCCATGGCACA
ATAGGGTGCACTTGGATGCCCTCAGAGTCTATTAGGAGACACAGTTTTTC
TGCAGAATTACTTTAAAAATAATAAGTTTTCATTATGGATCTAANAATAG
GTTGTAAATTCCTTAGGAATGGGGATCCAGGAAGTTAAGAATCATATGTA
CTGTCATCTTTGTCCCGTAATGTCCATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i08.g1 MSMg01no423_i08.g1 CHROMAT_FILE:
MSMg01no423_i08.g1 PHD_FILE: MSMg01no423_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:13 2005
         (600 letters)



>mm_chr18_27183226_27184225
          Length = 1000

 Score = 1100 bits (569), Expect = 0.0
 Identities = 592/600 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctagatcagagtcacagagtcatcagagtctgcctattcctcctggatgctcttattt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 800 atctagataagagtcacagagtcatcagagtctgcctattcctcctggatgctcttatta 741

                                                                       
Query: 61  aaagtgtacagcaccacaaagagcctgatatttatattttcatttctttttttgcttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaagtgtacagcaccacaaagagcctgatatttatattttcatttctttttttgcttcat 681

                                                                       
Query: 121 gtattaggtgaagtctataattttacctgtgtaataaaagcttagttgttttttctttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtattaggtgaagtctataattttacctgtgtaataaaagcttagttgttttttctttat 621

                                                                       
Query: 181 tataaatatctttaaaactgttttatttctcacctgattttctttctccactattgacca 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 tataaatatctttaaaactgttttatttatcacctgattttctttctccactattgacca 561

                                                                       
Query: 241 taattgtcctgtaataacagaaacagaaaataaagggtcttttattatgctgaaagatga 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaatgtcctgtaataacagaaacagaaaataaagggtcttttattatgctgaaagatga 501

                                                                       
Query: 301 ccttactgtttatatttctgctctaattgcttctcctccccatcttttccactgatacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccttactgtttatatttctgctctaattgcttctcctccccatcttttccactgatacat 441

                                                                       
Query: 361 aaactatttccagtaatcacagaaaggcttaaattttcttcaaaatctatgatcttccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaactatttccagtaatcacagaaaggcttaaattttcttcaaaatctatgatcttccac 381

                                                                       
Query: 421 caattcaccatgagatatttttgtatgtttctgaatgtctgatatgcaggataccaaagc 480
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagtttaccatgagatatttttgtatgtttctgaatgtctgatatgcaggataccaaagc 321

                                                                       
Query: 481 catggcacaatagggtgcacttggatgccctcagagtctattaggagacacagtttttct 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 catggcacaatagggtgcacttggatgccctctgagtctattaggagacacagtttttct 261

                                                                       
Query: 541 gcagaattactttaaaaataataagttttcattatggatctaanaataggttgtaaattc 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 gcagaattactttaaaaataataagttttcattatggatctaaaaataggttgtaaattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)