Query= MSMg01no423_n14.b1 MSMg01no423_n14.b1 CHROMAT_FILE:
MSMg01no423_n14.b1 PHD_FILE: MSMg01no423_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:37 2005
(482 letters)
>mm_chr18_11385668_11386549
Length = 882
Score = 882 bits (456), Expect = 0.0
Identities = 473/482 (98%), Gaps = 6/482 (1%)
Strand = Plus / Plus
Query: 4 ggaattctggattacgctactcaatatgaaggtcccattgcccctaatgtagaagaaatg 63
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaattctggagtaggctactcaatatgaaggtcccattgcccctaatgtagaagaaatg 257
Query: 64 tccgacagcacaaatctcaaaacagaaacaagagacatgaaaagtcaaggcatcttccaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tccgacagcacaaatctcaaaacagaaacaagagacatgaaaagtcaaggcatcttccaa 317
Query: 124 aagatgcgagcttttttacctagtgatctcagatatgttgaaataggtagaatgccaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagatgcgagcttttttacctagtgatctcagatatgttgaaataggtagaatgccaagt 377
Query: 184 gaagttataagtgttgtgtaaaaacaatcaatgactagaaagagaatataaataagcaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaagttataagtgttgtgtaaaaacaatcaatgactagaaagagaatataaataagcaga 437
Query: 244 tgaatttgatctagggtctagagaggaaagtcagaggtaaatggacttttaaaaagccaa 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 438 tgaatttgatctagggtctagagaggaaagccagaggtaaatggacttttaaaaagccaa 497
Query: 304 acacacatgtgacacacacacacacaca------tgcatacacacatgtacacacatgca 357
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 498 acacacatgtgacacacacacacacacacacacatgcatacacacatgtacacacatgca 557
Query: 358 cactaaaaccaaacccccttgtgaaacagatgagaaagaataagttggcaacatgaaaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cactaaaaccaaacccccttgtgaaacagatgagaaagaataagttggcaacatgaaaga 617
Query: 418 cattcaccaagaatagaaattttgaacagcaaccatataaaacgctagaaatttaaaaac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cattcaccaagaatagaaattttgaacagcaaccatataaaacgctagaaatttaaaaac 677
Query: 478 tc 479
||
Sbjct: 678 tc 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_n14.g1 MSMg01no423_n14.g1 CHROMAT_FILE:
MSMg01no423_n14.g1 PHD_FILE: MSMg01no423_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:38 2005
(520 letters)
>mm_chr18_11309592_11310511
Length = 920
Score = 975 bits (504), Expect = 0.0
Identities = 516/520 (99%)
Strand = Plus / Plus
Query: 1 tctagaggcccctctttgcatggaagctgactgtaatgatctatagatacttcttcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagaggcccctctttgcatggaagctgactgtaatgatctatagatacttcttcagag 260
Query: 61 gatgcttttgcagctgtttagatgagttaagttcctcaaaaggtgttgatagtttaatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgcttttgcagctgtttagatgagttaagttcctcaaaaggtgttgatagtttaatcc 320
Query: 121 ctctgggtggtacttcatatggagagacagcaggctttgcaacacactcaaagctctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctctgggtggtacttcatatggagagacagcaggctttgcaacacactcaaagttctgac 380
Query: 181 aaagctcttggatcttagtcaccttgctcacacatgggatgtggttagaacagatgtgga 240
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aaagctcttgggtcttagtcaccttgctcacacatgggatgtggtcagaacagatgtgga 440
Query: 241 ccatgcttgcttaaatgcacttttgtactgaggacagcttgccactggccattgcctaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgcttgcttaaatgcacttttgtactgaggacagcttgccactggccattgcctaat 500
Query: 301 taatgttcaacacccctaatgagtacctatgagtagatgagtattctcatttttttcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatgttcaacacccctaatgagtacctatgagtagatgagtattctcatttttttcaca 560
Query: 361 aattgatgcctctaggcagtgacagaatgatagcatgataaactccaaagcctcaggcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattgatgcctctaggcagtgacagaatgatagcatgataaactccaaagcctcaggcag 620
Query: 421 agacttcattttggatgggctgtgcacagggtggcatggtagactaataatggtaacaca 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 agacttcattttggatgggctgtgcacagggtgtcatggtagactaataatggtaacaca 680
Query: 481 ggctattaataacagtgtgatgaagcctgtggcttctcag 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctattaataacagtgtgatgaagcctgtggcttctcag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
