Query= MSMg01no424_b08.b1 MSMg01no424_b08.b1 CHROMAT_FILE:
MSMg01no424_b08.b1 PHD_FILE: MSMg01no424_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:56 2005
(591 letters)
>mm_chr18_43832173_43833164
Length = 992
Score = 1027 bits (531), Expect = 0.0
Identities = 576/593 (97%), Gaps = 7/593 (1%)
Strand = Plus / Plus
Query: 5 gaattcctag----ttttttttaaccttcttcaaccttacca-cgtctcctatctggtgg 59
|||||||||| |||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 201 gaattcctagagttttttttttaaccttcttcaaccttaccatc-tctcctatctggtgg 259
Query: 60 cactgtccacttgcctcatactcagtcaattctacctttcaacattctttctggcttatt 119
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 260 cactgtccacttgcctcacactcagtcaaatctacctttcaacattctttctggcttatt 319
Query: 120 gttttccttactaaccatgtaatatatgtacactgtgaacgatttaagaaacatgggtca 179
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 320 ctttcccttactaaccatgtaatatatgtacactgtgaatgatttaagaaacatgggcca 379
Query: 180 caatgaaaaataaccttaaaaaatattcaactgtgtttctagcacctgagtatgtttctt 239
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 caataaaaaataaccttaaaaaatattcaaccgtgtttctagcacctgagtatgtttctt 439
Query: 240 ttttttttt-cctgcgagtgttttctctatttgcacagacaagtgcattttaagtgagcg 298
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 ttttttttttcctgcgagtgttttctctatttgtacagacaagtgcattttaagtgagcg 499
Query: 299 caatgttttctgatctacatctgtactcaaggcactctgaacaccttcactggacacaac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caatgttttctgatctacatctgtactcaaggcactctgaacaccttcactggacacaac 559
Query: 359 atttgcattgtgatagtctttagatcactcacagcccatacctctcagtgatgctatctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttgcattgtgatagtctttagatcactcacagcccatacctctcagtgatgctatctc 619
Query: 419 actgtgtaccaacatcacagctggaacagctgtactttacaaatagaaggagtaaatcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actgtgtaccaacatcacagctggaacagctgtactttacaaatagaaggagtaaatcaa 679
Query: 479 tgtggatttgaaccacctttaggctctgttaagttccctgggactgcaatcctgccttct 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtggatttgaaccatctttaggctctgttaagttccctgggactgcaatcctgccttct 739
Query: 539 tttcttgttccatcccatctcagttgcttcgaggagattgtaggctaatggga 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttcttgttccatcccatctcagttgcttcgaggagattgtaggctaatggga 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_b08.g1 MSMg01no424_b08.g1 CHROMAT_FILE:
MSMg01no424_b08.g1 PHD_FILE: MSMg01no424_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:56 2005
(569 letters)
>mm_chr18_44012479_44013447
Length = 969
Score = 1025 bits (530), Expect = 0.0
Identities = 560/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 1 caggtaactgttaacttttgaatataggtgctggtaatcaaacttaggttttctgaaaga 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 caggtaactgttagcttttgaatataggtgctggtaatcaaacttaggttttctgaaaga 876
Query: 61 atggtacatacccataatcattgagccatttcttccacccc-gatctgaattttaaaatt 119
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 875 atggtacatactcataatcattgagccatttcttccacccctgatctgaattttaaaatt 816
Query: 120 ctgtgcaaaattttactttccatatatttcatttctctgctggttatcctgccaaccacc 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ctgtgcaaaattttactttccgtatatttcatttctctgctggttatcctgccaaccacc 756
Query: 180 accaccaacatgcctattttgttgttgttgttgttgtcagatactatactaagtgcttta 239
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 755 accaacagcatgcctattttgttgttgttgttgttgtcagatactataataagtgcttta 696
Query: 240 tatacattcgtttattcacatgatttaatagcctcatgaagtatatactcttacctcgga 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 695 tatacattcgtttattcacatgatttaatagcctcatgaagtatatactcttaccttgga 636
Query: 300 taacttgagaaaacgaagatgttttgaaggcaatgaggctgaaacatggctgagatgtca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 taacttgagaaaacgaagatgttttgaaggcaatgaggctgaaacatggctgagatgtca 576
Query: 360 atttatatctctgtaaaaagccactgcacatgggctgaggactcagacttagggttctca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atttatatctctgtaaaaagccactgcacatgggctgaggactcagacttagggttctca 516
Query: 420 gtctatggccaagtctaggtgttggagtttggtctaatgctgctttgtattcaaatgcta 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtctatggccgagtctaggtgttggagtttggtctaatgctgctttgtattcaaatgcta 456
Query: 480 aatactggccccaagatctgattgctccccacccccaagagcacatcttcatgttcacca 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 455 aatactggccccaagatctgattgctccccacccccaagagcgcatcttcatgttcacca 396
Query: 540 agtggtgctttgtaaacccactccccaatt 569
||||||||||||||||||||||||||||||
Sbjct: 395 agtggtgctttgtaaacccactccccaatt 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
