Query= MSMg01no424_k16.b1 MSMg01no424_k16.b1 CHROMAT_FILE:
MSMg01no424_k16.b1 PHD_FILE: MSMg01no424_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:41 2005
(595 letters)
>mm_chr18_15634536_15635533
Length = 998
Score = 973 bits (503), Expect = 0.0
Identities = 552/569 (97%), Gaps = 3/569 (0%)
Strand = Plus / Minus
Query: 30 gagccaggaggtacggtaaccaccaggagtcccagcactaggtagactttgacaaggggt 89
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 998 gagccaggaggtacggtaaccaccaggagtcccagcactaggtagactttgacaagggat 939
Query: 90 gatgcagggctagctagggtagccaagccacaagctcttaattcagttgagtaactgact 149
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 938 gatgcagggctagctaggttagccaagccacaagctctgaattcagttgagtaactgact 879
Query: 150 ctaagtcactaactaaagtgaagaataatggaggatgaagattgatacctgaggcttcca 209
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 878 ctaagtcagtaactaaagtgaagaataatggaggatgaagattgatacttgaggcttcca 819
Query: 210 aatgcacatgtgcacacatatgtgtgccccaaacatgtgaacacacatatatgtgcagca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 aatgcacatgtgcacacatatgtgtgccccaaacatgtgaacacacatatatgtgcagca 759
Query: 270 tatgctcacacaca--tgaaaagtccacagtctttgccacactgtggtattccagcagag 327
||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 758 tatgcacacacacacatgaaaagtccacagtctttgccacagtctggtattccagcagag 699
Query: 328 tgtggtcctgccctcctctttcattttgctgtgtcttagtgggatatctctgccttaagc 387
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 698 tgtggtcctgccctcctctttcattttgctgtgttttagtgggctatctctgccttaagc 639
Query: 388 actcaggcctgctcatgccctc-ccccctgtccacactcactcaatacaaggccggtgca 446
|| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 638 acgcaggcctgctcatgccctcaccccctgtccacactcactcaatacaaggctggtgca 579
Query: 447 tctactgcctcccatacctgaaatgtcatgctcacttatctcatgtttcttttaagctta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctactgcctcccatacctgaaatgtcatgctcacttatctcatgtttcttttaagctta 519
Query: 507 actggatccgaaaatagcttctccctgggcatctattcaacgcagactcacctctcttcc 566
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 518 actggatccgaaaatagcttctccctgggcatctattcagcgcagactcacctctcttcc 459
Query: 567 tttgatgcacttaaatacatcactctgat 595
|||||||||||||||| ||||||||||||
Sbjct: 458 tttgatgcacttaaattcatcactctgat 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 998
Length adjustment: 10
Effective length of query: 585
Effective length of database: 988
Effective search space: 577980
Effective search space used: 577980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_k16.g1 MSMg01no424_k16.g1 CHROMAT_FILE:
MSMg01no424_k16.g1 PHD_FILE: MSMg01no424_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:41 2005
(245 letters)
>mm_chr18_15441710_15442354
Length = 645
Score = 439 bits (227), Expect = e-128
Identities = 238/243 (97%), Gaps = 3/243 (1%)
Strand = Plus / Plus
Query: 1 catccttaggatgctggtcatttactcttactctgtgtcttctcctctaacccacagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccttaggatgctggtcatttactcttactctgtgtcttctcctctaacccacagttt 260
Query: 61 tgaatgaaacccttctcttctgcactctgagagcacctgtctgtagcgtagtaaagggtt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tgaatgaaacccttctcttctgcactctgagagcacctgtctgtagcatagtaaagggtt 320
Query: 121 taaccagctgtatcagaagcatgcgctcatgcctagatccttttatgactatatgtgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaccagctgtatcagaagcatgcgctcatgcctagatccttttatgactatatgtgtca 380
Query: 181 atgggaggcagagcccattttatttaagtccagtatccctaatccttagcac---aataa 237
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 381 atgggaggcagagcccattttatttaagttcagtatccctaatccttagcactttaataa 440
Query: 238 tga 240
|||
Sbjct: 441 tga 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
