Query= MSMg01no425_f13.b1 MSMg01no425_f13.b1 CHROMAT_FILE:
MSMg01no425_f13.b1 PHD_FILE: MSMg01no425_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:32 2005
(637 letters)
>mm_chr18_33990436_33991473
Length = 1038
Score = 1021 bits (528), Expect = 0.0
Identities = 597/634 (94%), Gaps = 23/634 (3%)
Strand = Plus / Plus
Query: 5 gaattcttagcaacttc-ccaagaggagaaagaaaccagagaaaataacaagggtgttgt 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagcaacagcaacaagaggagaaagaaaccagagaaaataacaagggtgttgt 264
Query: 64 aaaaataaaagaaacactctatccacagaggaatactgcacacctgcacagggaacatcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 aaaaataaaagaaacactctatccacagaggaatactgcacacctgcacagggtacatcc 324
Query: 124 aacaatggtacacacatcaaaggtttagtagtgagcatgtttttacataggttcaatata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaatggtacacacatcaaaggtttagtagtgagcatgtttttacataggttcaatata 384
Query: 184 ttgttcaataatttaaaaccaaactttcaaagatcaagttttcaaagtaaatgcttccct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgttcaataatttaaaaccaaactttcaaagatcaagttttcaaagtaaatgcttccct 444
Query: 244 tttgaacagagaaaaagtttaaaaataaataaataaataaataaataaataaataaataa 303
||||||||||||||||||||||||||||||||||||| ||| ||| ||| |||
Sbjct: 445 tttgaacagagaaaaagtttaaaaataaataaataaacaaacaaacaaacaaa------- 497
Query: 304 ataaataaataaaagcagtaaagctctagtgttgtagcacagagtgtatgtgtttactaa 363
|||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 ---------------cagtgaagctctagtgttgtagcacaaagtgtatgtgtttactaa 542
Query: 364 gttaggaaagaaaaatgaggggagagggagacagggaagactagagagatgaaaagaaaa 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggtaggaaagaaaaatgaggggagagggagacagggaagactagagagatgaaaagaaaa 602
Query: 424 ccataagcaaccacctgttaaagagtaacaaaatctcaggtgacacagtaactacgttcc 483
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 603 ccataagcaaccacctgttaaagagtaacaaaatctcaggtgacacagttactatgttcc 662
Query: 484 ttccccaaactccttctcatctgcagggcagtggcatgggaaggggactgggttccctcg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttccccaaactccttctcatctgcagggcagtggcatgggaaggggactgggttccctcg 722
Query: 544 gtgaggtttggaggtctgcatttcacggaagatggctgctcttatgttggctatgtcatg 603
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 723 gtgaggtttggaggtctgcatttcacggaagatggctgctcttatgttgcctatgtcatg 782
Query: 604 agcctgccctgtacctgcaggtgtagctgcttcc 637
||||||||||||||||||||||||||||||||||
Sbjct: 783 agcctgccctgtacctgcaggtgtagctgcttcc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_f13.g1 MSMg01no425_f13.g1 CHROMAT_FILE:
MSMg01no425_f13.g1 PHD_FILE: MSMg01no425_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:32 2005
(489 letters)
>mm_chr18_34138577_34139466
Length = 890
Score = 770 bits (398), Expect = 0.0
Identities = 468/494 (94%), Gaps = 7/494 (1%)
Strand = Plus / Minus
Query: 1 ttcctttcactgaattgtgtttgaaggtttcagttcatcttctctgattacttttgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ttcctttcactgaattgtgtttgaaggtttcagttcatcttctctgattacttttgcctc 758
Query: 61 ttcagttacatatttacttagtgaattagaatttatcagatgcagagtctatagaatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttcagttacatatttacttagtgaattagaatttatcagatgcagagtctatagaatggg 698
Query: 121 gcaactgtcattc----atatacacacacacacacacacacacacacacacacacacata 176
||||||||||||| ||||| | | | | | ||| | | | | | | | |||||| |
Sbjct: 697 gcaactgtcattcatatatatatatatatatatacatatatatatatatatacacac--a 640
Query: 177 cacacacacatatataaaacactgttaatgtaaacattatgtaatatgtgattttacttt 236
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 639 cacacacacatatataaaacactgttaatgtaaacattatgtaatatgtaattttacttt 580
Query: 237 ttaagtgatggttgcttgtatttgaaatgtgatagtgtcttcattttggttttatatttt 296
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 579 ttaagtgatggttgcttgtatttaaaatgtgatagtgccttcattttggttttatatttt 520
Query: 297 cagaaattctcttgaggtggtcttg-ttatacccaagttggctgagatctgaggatttgg 355
||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct: 519 cagaaattctcttgaggtggtcttgtttatacgcaagttggctgagatctgagcatttgg 460
Query: 356 ttcagatgggattcaaactcggatcattatgccttatgagtacaggggtgacaaatgtgc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttcagatgggattcaaactcggatcattatgccttatgagtacaggggtgacaaatgtgc 400
Query: 416 cccaacatgcccattttttttctgagacagggtttctctctgtagccctggatgtcctgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cccaacatgcccattttttttctgagacagggtttctctctgtagccctggatgtcctgg 340
Query: 476 aactcactctgtag 489
||||||||||||||
Sbjct: 339 aactcactctgtag 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
