BAC Information

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BAC

Clone NameMSMg01-426I07
Chromosome18 (Build37)
Map Location 43,419,995 - 43,420,274
singlet/doubletsinglet
Overlap geneStk32a
Upstream geneLars, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594
Downstream geneDpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426I07.T7 (MSMg01no426_i07.b1)MSMg01-426I07.TJ (MSMg01no426_i07.g1)
ACCAG519939AG519940
length842799
length of high quality
(start - end)
284 (39 - 322)463 (68 - 530)
definitionCHROMAT_FILE: MSMg01no426_i07.b1 PHD_FILE: MSMg01no426_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:05 2005CHROMAT_FILE: MSMg01no426_i07.g1 PHD_FILE: MSMg01no426_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCA
TCACCAATAATCCATGCTTCCTTGGGTATGGTTTACTGGCACTTACTTCT
TGTAATGCAAATAAAACTTCAAAATATGGTTTCGGCGACACTAGGAAAAC
AGAAACACATTAAAGCAGTTATTGATTTAGATGACTTTGTTGTGACAAGA
AATCATGCCCGAGCAGTGGGCACAACAAAACAAGTCCCCACAGGAAAAGA
ATGCCTTTACCAAGGTGTTGTTCATATAAACACATCCCCCACATCTTTGC
TGGAGGTTCTGTGTGTACAATATTTTTCCTGCTTGGGGTTGTCTGTGTTC
TGCTTCATCTCCCACTCCTCAGCCCCATGATCCTTCGAGGAAAGAGCTTA
TATCCGGGTCCTATAGCTGGCATCCCACCTGTCAGGGACTCCTCAGTGTC
CATACTTTTGGGGTAAAGTTCCCGTCACAAAATTGGCCCACGAAATTTTT
TTCCCTCAAATTTAGGTTTTCCACCCTTGCTTGTAGGTTCCCTAAAATCC
CTTTTTCTACCCTTTCCCTGGGGTCTCTCCTTCTGGTCTTCACTTCTACG
ATGTGATTCTTGCATCTTTTCTTTCTCCTTTTTTTTTTCTCCCGCTAAAT
TCTATTTATCTTCCTTTTTTTTTTCCATACTTCCACTTTTCTTTATTCGG
TATATATCCCATATAACCTTCCTTTTTTTCTCCTTTCTTCCGTCTGCCTT
TCTTTTCTCTTACTCGATCTTTTTGTTATCTTTCTTTCTTATTTTTCATC
CTTTATCATTATTTTATTCCTATTTCCCCACCTCCACTCACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCACCTAGTGATCTTTTTTTCTGTAGCAGACCT
ATTATGTATGTGGTCATCTGTGACGGGACCTTTGTGAGACCTGGGAGTCA
TGTACAACCAATGTTAACCATGGGAAGTACTGGCTAATGCTTTTGTCTTG
AGTGAGAAATTTCTGTGTCCCTAACCATGAGTCTCCTAGCTTCTGCCAGT
ATCTGTGAAATGATAAGAGACTAACTTTTAAGCTATACATAGTAAATTTA
CAAACTCTACAAAGTTCTTGACATGTTAATTAACTTATTGCAGTACTCTG
AGGGACTATATTTTAGAGATAAAAAAATTAAGTCTTGGCATTATTTAGTA
GCTTGCTTAACTTTATGTGGCAATTCCGTAGCAGAACTAAGATCAACCTT
GTTCTGTCTGAAAAAAGTTATATATCGATACCTATAATGTATTGTCTCTC
CAAATATTGAAATTACTATCAAAGCAGGATACACATGTTACTATTTTAGT
AAAACTATCGACACTGATTCATTTCAGCAACTGTGTATCAGCCATGGTCC
TTGCTTCTTGTANCAAAAATGTCTATCTCAACTCTCCTGGGAAAATCTAA
ATTTTATATGGACCCTGGATGTGCACTTGGTTATTCAGCTTTTGACAATT
AAGGTTCCATATATTTCGGTGGCCGGCCTGGGGTTCGTTCCTATAACCTC
CAACATTTTCTAACCTAATCCCCTGCGATATTCTTTTTGGAAGATGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_i07.b1 MSMg01no426_i07.b1 CHROMAT_FILE:
MSMg01no426_i07.b1 PHD_FILE: MSMg01no426_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:05 2005
         (284 letters)



>mm_chr18_43419790_43420474
          Length = 685

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%), Gaps = 1/280 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcatcaccaataa-tccatgcttccttgggtatggtttactggcacttacttcttg 64
           |||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 206 gaattcatcaccaagaattacatgcttccttgggtatggcttactggcacttacttcttg 265

                                                                       
Query: 65  taatgcaaataaaacttcaaaatatggtttcggcgacactaggaaaacagaaacacatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taatgcaaataaaacttcaaaatatggtttcggcgacactaggaaaacagaaacacatta 325

                                                                       
Query: 125 aagcagttattgatttagatgactttgttgtgacaagaaatcatgcccgagcagtgggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagcagttattgatttagatgactttgttgtgacaagaaatcatgcccgagcagtgggca 385

                                                                       
Query: 185 caacaaaacaagtccccacaggaaaagaatgcctttaccaaggtgttgttcatataaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 386 caacaaaacaagtccccacaggaaaagaatgcctttaccaaggtgttgtgcatataaaca 445

                                                   
Query: 245 catcccccacatctttgctggaggttctgtgtgtacaata 284
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catcccccacatctttgctggaggttctgtgtgtacaata 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)