BAC Information

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BAC

Clone NameMSMg01-426I20
Chromosome18 (Build37)
Map Location 89,183,566 - 89,183,991
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426I20.T7 (MSMg01no426_i20.b1)MSMg01-426I20.TJ (MSMg01no426_i20.g1)
ACCAG519965AG519966
length803803
length of high quality
(start - end)		428 (45 - 472)415 (71 - 485)
definitionCHROMAT_FILE: MSMg01no426_i20.b1 PHD_FILE: MSMg01no426_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:08 2005CHROMAT_FILE: MSMg01no426_i20.g1 PHD_FILE: MSMg01no426_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTACAATGTGAAGACACAGGTTTAGTGACATTATAGACACCTAA
ACATTCCTGTAAAATAATACAAATATTTTGAAATTAGTAAACAGTATTTC
TAAGAGTACTCTTTCTTCTGTTTGTAATTTGTTTCCACTGTTAGTTTTCA
CATCATTAAAAGGTTATTTATCTAGTAAGATTTTTCTACCCAACTGTTCA
AGTCTATATGGGCTATGTAATGTTCAATGAGTAGTCTTCAGAAATAAAAA
ACACAATCATAACTTTCAAAGTCAACAGATATAAAAGACATGACAAAACG
CTAAAACTCTAACCTAATGTGTGATTTGATTTACTGAAGCTTGAGAAGGA
AAAACAAAATTCAAATTAAAAAAAAAAAAGGAAGGAAGGAAAGATAAGGA
GAGAGGGAAGGAAGGCGAGAGTGGTGTGTATTGAGAATATGTGAAGCATA
TCATATGAAGAAACATAAACCCCTTTCTCAATTATAAGGGGAAATGTTTT
CCTAAAACCGGGTGAATGGGGGAAAGAAAAAAAAGGGTCCAAAATATTTT
GGGGTATTTTTTTCTCTTAAGGTGGGAGCCTCGGGAAGACTGGGGTTCAA
ACCTTAAAACAAATTTCTTTTAACGGGAAAGAAATTCCTTTTTAAACAGG
AACAGTTCACCGGGTGAATAAAACTTGTGGGGTTTTCCCGGATGCGTATG
TTCATCTTTTTTCACCTTTATGTTGGTTCGGTTATAGTATCCAGCTTTTC
GGT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCATTTTTTAAAT
TGGGATAGAGGAATAGATGGCAGGAAATAATTAAACTCAAGACAGAAATC
AACCAATTAGAAACAAAGAGAATGATACAAAAAAAATCAACAAAATGAAA
AGCTAGTTCTTTGAGAAAATGAACAATATAGATAAACCCTTACTAAACTA
TATAGCCAAACTAACTAAAGGACACAGAGACCTTATCCAAATTAACAAAT
CAGAAATGAGAAGGGAGGCACAACAACAGAAACTGAGGAAATTTAAGAGT
CATCAGATCTTACTACAAAAGCTTTACTCAACAAAACTGGAAAATCTAGA
TGAAATGGATGACTTTTTAGACAGATATCACATACCTAAGTTAAATCAAG
AGAAGATAAACTAAACAGTCCCATGGCTCCTAAGGAAATAGAAGACGCCA
CTCAAAACCTCCCAAACAAAAAAAGCCCAGAGCCAGATGGATTTAGTGCA
AAATCTTACCAGAACTTCTTAGAAGACCTTAATACCACACTCCCCCACGC
TATTTCTTAAAATTGGAACCGAGGGAAAACTACCCTAATTCCTTCCTTGA
AGTAACGGTTACTCTGATACCTAAACCCCCCAAGACCCCCCAAAAAAAAA
AAATTCTCAACCCTTCCCTTTATAAATTGGGGTTTGAAAACACCCCTTTT
CTTCCAATTGGCTCCCGAATATATTCTAAAACCTCTTTTTCCCACCCCAA
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_i20.b1 MSMg01no426_i20.b1 CHROMAT_FILE:
MSMg01no426_i20.b1 PHD_FILE: MSMg01no426_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:08 2005
         (428 letters)



>mm_chr18_89183409_89184236
          Length = 828

 Score =  774 bits (400), Expect = 0.0
 Identities = 419/426 (98%), Gaps = 2/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactacaatgtgaagacacaggtttagtgacattatagacacctaaacattcct 64
           |||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 583 gaattccactacaaagtgaagacacaggtttagtgacattttggacacctaaacattcct 524

                                                                       
Query: 65  gtaaaataatacaaatattttgaaattagtaaacagtatttctaagagtactctttcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gtaaaataatacaaatattttgaaattagtaaacagtatttctaagagtactctttcttc 464

                                                                       
Query: 125 tgtttgtaatttgtttccactgttagttttcacatcattaaaaggttatttatctagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgtttgtaatttgtttccactgttagttttcacatcattaaaaggttatttatctagtaa 404

                                                                       
Query: 185 gatttttctacccaactgttcaagtctatatgggctatgtaatgttcaatgagtagtctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gatttttctacccaactgttcaagtctatatgggctatgtaatgttcaatgagtagtctt 344

                                                                       
Query: 245 cagaaataaaaaacacaatcataactttcaaagtcaacagatataaaagacatgacaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagaaataaaaaacacaatcataactttcaaagtcaacagatataaaagacatgacaaaa 284

                                                                       
Query: 305 cgctaaaactctaacctaatgtgtgatttgatttactgaagcttgagaaggaaaaacaaa 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 283 cgctaaaactctaacctaatgtgtgacttgatttactgaagcttgagaaggaaaaacaaa 224

                                                                       
Query: 365 attcaaatt--aaaaaaaaaaaaggaaggaaggaaagataaggagagagggaaggaaggc 422
           |||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 223 attcaaattaaaaaaaaaaaaaaggaaggaaggaaagaaaaggagagagggaaggaaggc 164

                 
Query: 423 gagagt 428
           ||||||
Sbjct: 163 gagagt 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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