BAC Information

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BAC

Clone NameMSMg01-426I21
Chromosome18 (Build37)
Map Location 50,278,930 - 50,279,349
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8
Downstream geneHsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426I21.T7 (MSMg01no426_i21.b1)MSMg01-426I21.TJ (MSMg01no426_i21.g1)
ACCAG519967AG519968
length859780
length of high quality
(start - end)
49 (76 - 124)453 (76 - 528)
definitionCHROMAT_FILE: MSMg01no426_i21.b1 PHD_FILE: MSMg01no426_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:08 2005CHROMAT_FILE: MSMg01no426_i21.g1 PHD_FILE: MSMg01no426_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAGAGATTCCCAAAACAAAACAGTTTTCAATATAGTGCTAAAA
GAATTGAATAGTGAGGTGGCGGGGCCGGGGGTATAGGATACTTCCCCCNC
TGCCGCGTTCTCCTCCCCATGCCTCCCCCCCCCCCCCTCTTCTCTCCCGC
CCACCCGCTTTCTCTTGTTGCTGTTCCCGCGCGTGCCTGTCCCCAGTCGC
CCGCTCGCCCTTTCTTTTTTTTTTCCCTTCACTCCCTTCTCTCCTTCCTC
CTCCTTTCCCCTCCCTCCCTTTTCCGTTGGGCGACGGGATTTTTTTTTTC
AGCCAGACCCGCGGACTGTGTCCCCTCTTTGTCTTCCTCCCCCCCCCCTC
CCCTTTCCTTCGTCTCCTTCCCTTCTTCCTCTTCCCTGTCCCCTCCCCCC
CCCCCCTCCCTTTCCCTTTTCTCCTCCCCCTCTCTCCTCTCTTTCTCTTT
CTTTCCCCCTCTCCCCTTCCCCTCCTCCTCTACTCCCCCTTTTCCCTCCT
CCCCCCCCTCCCCCCTCCCTTCCTTTCTTTCCCCTATCTTCCTCCCTCCT
CCTCCCCCCCCCCCTCCCTTCTCCCCTCCCCCCTCCCTTTCCTTCTTGCC
CCCCCCTCTTTCCCTCCCCCTTCCCCCATTCCTCCTCCCCTCTCCCACCC
TCTCCCCTCTTCCTCTTCCTCTCCCCTCCCTCCACCCCTCCCTTTCTCCC
TCCTTCTTCTTCTCCTCCTCTTCTTCCCCCTCCTCCCTTTTTTCCACTCC
CCCTTCCGTCTCTCTCCTCCACCCCCCTCTTCTCGTCTCCTTCCCTTCCC
CCTCTTCTN
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGAAGCTCACTGGTAGCAACAAT
CGTGAACAAGAGACTTTTTCTCAAACAAGGTTGAGAAACATGGGCCAACA
TGTTGAGTTTTCCTCTGATTTCCATATGTGTGATATGAAACATGGCGCAC
ACACGGGGGAGGGGAAGGAAGGAAAGAGACAGAGACACAGAGACAGAAAA
AGCGAGAGAAAAGACAGAGAATGTTCTTTATTAATTTTTTATTAAACATT
TTTTATATCAATTCAAGTCTGGCAAATACTTTCACTCCCATTTTGGCTTC
TCAATCCCAGAACAAAACTAACCACTCTGTCTGATCCAAATTAGTTAACA
TTTGAGAAGTACAGAGGAAAATGTTACTGTAAAACTAGAAAGAATGAATC
ATGTTCAGAAACAATTTAATCAAGATCGTAATTTTCTTTTCATTTCACAA
CAAGAAGCATTAGCTGCCTTTTATTCCAGACTAGCTTCTAAAAGATCCTG
ACAGAGAATAAAAAATTATTTAAGCCCCTAGACCTGTGTCCAAAATAGCT
CCATTGTTTCAGGATGCCAGGNGTTTGCGTTTTTTCCCGGGGGTTGGCGG
TTTTGCCTTTCTATAACCCAATGCCAGGGGTTGGGGGTTTTTGGCCTTTT
AAAACCCTTACCCCCTGGAATCTTTGGTAATCCCCCCCCCCCGCCGGGAT
AAAAAATGGCCCCCCGGCCACTGGCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_i21.g1 MSMg01no426_i21.g1 CHROMAT_FILE:
MSMg01no426_i21.g1 PHD_FILE: MSMg01no426_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:08 2005
         (453 letters)



>mm_chr18_50278497_50279349
          Length = 853

 Score =  804 bits (416), Expect = 0.0
 Identities = 420/422 (99%), Gaps = 2/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 32  caagagactttttctcaaacaaggttgagaaacatgggccaacatgttgagttttcctct 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 caagagactttttctcaaacaaggttgagaaacatgggccaacatgttgagttttcctct 794

                                                                       
Query: 92  gatttccatatgtgtgatatgaaacatggcgcacacacgggggaggggaaggaaggaaag 151
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gatttcc--atgtgtgatatgaaacatggcgcacacacgggggaggggaaggaaggaaag 736

                                                                       
Query: 152 agacagagacacagagacagaaaaagcgagagaaaagacagagaatgttctttattaatt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agacagagacacagagacagaaaaagcgagagaaaagacagagaatgttctttattaatt 676

                                                                       
Query: 212 ttttattaaacattttttatatcaattcaagtctggcaaatactttcactcccattttgg 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttttattaaacattttttatatcaattcaagtctggcaaatactttcactcccattttgg 616

                                                                       
Query: 272 cttctcaatcccagaacaaaactaaccactctgtctgatccaaattagttaacatttgag 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cttctcaatcccagaacaaaactaaccactctgtctgatccaaattagttaacatttgag 556

                                                                       
Query: 332 aagtacagaggaaaatgttactgtaaaactagaaagaatgaatcatgttcagaaacaatt 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagtacagaggaaaatgttactgtaaaactagaaagaatgaatcatgttcagaaacaatt 496

                                                                       
Query: 392 taatcaagatcgtaattttcttttcatttcacaacaagaagcattagctgccttttattc 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taatcaagatcgtaattttcttttcatttcacaacaagaagcattagctgccttttattc 436

             
Query: 452 ca 453
           ||
Sbjct: 435 ca 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)