BAC Information

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BAC

Clone NameMSMg01-426P13
Chromosome18 (Build37)
Map Location 51,540,381 - 51,540,736
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426P13.T7 (MSMg01no426_p13.b1)MSMg01-426P13.TJ (MSMg01no426_p13.g1)
ACCAG520283AG520284
length795767
length of high quality
(start - end)
253 (61 - 313)535 (72 - 606)
definitionCHROMAT_FILE: MSMg01no426_p13.b1 PHD_FILE: MSMg01no426_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:42 2005CHROMAT_FILE: MSMg01no426_p13.g1 PHD_FILE: MSMg01no426_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGATCACTATTCAAGACGAGCGCGGAATTCCAC
CCCTTACAAGGAGCTGCCAAAATTGGGCTTCTGAGTGAGAGAGTCAGTTT
TTTGCAGGGTGCAACCTCTGGGGGGCTATCCTGCTCCAGTGGGTGGCCCT
ATACCTATTGCATATATTGACTACAATAAAAAGTCTCAGTGGGTAAAACC
AAAGGAAACAAAATGAGATGAAACGAAATGAAACCAAACCAAACCAAACC
AAACCAAACCACCCCAAACACTATGTGAACGTAGGAGGGAGTATTAAGAA
TGGAGGGGGAATGTTTTTTTTTNNNNNNNTNTNTNTCNTTTTTTTTTTTT
TCTTTTTTCTTCCCCCCCTTTTGTGCTTTTTTTTTTTCCTTTTTTCTTTT
TTGGTCGCTTCCTCTTTTTTTTTTCCTCTTCTCCCCTCTCTCTCCTCTTC
CTTTTTTTTTTTTTTTACTTCCTTGCTTCCCTTTTTTTCTTTTTCTTTTT
TCGCCTCCCTTCTTCCCTCTTTCCTCCTTGTTGTTCCCCTCGCCTTTTTT
CCCCTTCCGTGTTCCTGGTCTCTTCGTCTGTTTCTTCCTTTCTTTTATTG
TTTTACCCTCTCATTTCATTTTTTTACATTTTTCTCTTTATTCTTTACCT
CCTTCATGGCCTTTTTTTTCTTCTTGTTCTTTTTTTTTCGCTTCTTTGAT
ATTTTATTTTTTTTTTACTTATCCGTTTTTTATCTACCTCTCCTCTATTT
ATTTTCGCCGTTTTACCCGCTTTTTTTTCCTTTTTCCTTTCCTTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTTGGTGATGAACAGCAATGTGGAAATG
TAAGCGGCATAAATCCTTTTCTCCCCAATTTGCTTCTTGGTCATGATGTT
TGTGCAGGAGTAGAAATGCTGACTAAGACAGTTGGGATGGCAGGTTGACA
CTAGTTGGGCATGTGATGATTAATATTGACTGCCAATTTGGTGAGATTTA
CAATCATCATGGAAACATATGTCTTGGCAGGCCTCTGAGGGTAATTTTAG
ACTAATTGATGAGAAAAAATATCTGGTTGTGGATTTAGCAACATTTCCCT
GGCTCGGATCTCAGATCTAGTGAAAAGGGAAAGCAAGCAGAGCAGTGCCA
TTTATTTCTCAGGTTCTTTAGTACAAAAGCAATGTGACCAGCCCTTTCAC
CTTCACTTTTATAACTCGAACCCAGAAACCCATAAGGTAAAACAAATCTT
TCACCATTTAAGGTGCTTTGTCTTGTATTTGATCACAACAATAAGTAACA
CTGTTACTTCACCTTATGCCTATACTGACAGTGCCATATTTTTAAAATTA
ACAGCAAATTGAGGGTCAAGTAGCTTTCCCTTGGTACTTATGGTAGTACT
CATTTAGGGGTATGATATTTCCATTTGTTGCCTGGAATGCATGCTGTGTG
GTACAACAGAAGAGGGTGTCCGACCCCTTGGAACTATATTTATAGTTTTA
GTAACCCCTGGGGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_p13.g1 MSMg01no426_p13.g1 CHROMAT_FILE:
MSMg01no426_p13.g1 PHD_FILE: MSMg01no426_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:42 2005
         (535 letters)



>mm_chr18_51539802_51540736
          Length = 935

 Score =  650 bits (336), Expect = 0.0
 Identities = 351/356 (98%)
 Strand = Plus / Minus

                                                                       
Query: 180 caatcatcatggaaacatatgtcttggcaggcctctgagggtaattttagactaattgat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 caatcatcatggaaacatatgtcttggcaggcctctgagggtaattttagactaattgat 876

                                                                       
Query: 240 gagaaaaaatatctggttgtggatttagcaacatttccctggctcggatctcagatctag 299
           ||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 875 gagaaaaaaaatctggttgtggatttagcaacatttccctgactaggatctcagatcgag 816

                                                                       
Query: 300 tgaaaagggaaagcaagcagagcagtgccatttatttctcaggttctttagtacaaaagc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgaaaagggaaagcaagcagagcagtgccatttatttctcaggttctttagtacaaaagc 756

                                                                       
Query: 360 aatgtgaccagccctttcaccttcacttttataactcgaacccagaaacccataaggtaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aatgtgaccagccctttcaccttcacttttataactcgaacccagaaacccataaggtaa 696

                                                                       
Query: 420 aacaaatctttcaccatttaaggtgctttgtcttgtatttgatcacaacaataagtaaca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aacaaatctttcaccatttaaggtgctttgtcttgtatttgatcacaacaataagtaaca 636

                                                                   
Query: 480 ctgttacttcaccttatgcctatactgacagtgccatatttttaaaattaacagca 535
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 635 ctgttacttcaccttatgcctatactgacagtgccatattttttaaattaacagca 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)