BAC Information

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BAC

Clone NameMSMg01-427M24
Chromosome18 (Build37)
Map Location 31,932,875 - 32,151,916
singlet/doubletdoublet
Overlap geneAmmecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549
Downstream geneIws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427M24.T7 (MSMg01no427_m24.b1)MSMg01-427M24.TJ (MSMg01no427_m24.g1)
ACCAG520923AG520924
length738748
length of high quality
(start - end)		439 (54 - 492)508 (83 - 590)
definitionCHROMAT_FILE: MSMg01no427_m24.b1 PHD_FILE: MSMg01no427_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:47 2005CHROMAT_FILE: MSMg01no427_m24.g1 PHD_FILE: MSMg01no427_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,151,549 - 32,151,916)(31,932,875 - 31,933,382)
sequence
NNTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
ATCCGCGGAATTCCAGGCTCTCTCCCAATTCTCAGTCAATAACAGCTGGC
TATTCACCCAATGTTAACCACGGTGACCCTTACCAATCTGTCCATGGGCT
TGTCTACTTAAAGGGTGTCATCTCCCTTAGTACTTCAGGTTGAAAGTACC
CTCTGGAGTTTTGGAGACAGAAGGGAAGCTAACATCATGCCCAGTTCCCT
GTCAGTCAGACTAGCCTCAAACCTTAGCTCCCTCTCCCACCATCCAGCTG
TTTATATTCATCCAGAGGAAGAGAGGCCAAGCAGAACTCAAGAGTCTATG
CCTCTAAGTAGATTCATGTCTTCCTTCCACTGTGACGGAGAAGTGTTGAA
TTGCTGCCTTTATTGGGGTAGCATCCAGACTAGTATAAGCAAGTCCCACT
TAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNN
NNNNNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTNTTT
TTTTTTTTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTT

NNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTAGATCAGGTTG
GCTTTGAACTCAGAGGCGTGCTTCTGCCTCCCAGTGCTAGGACTAAAGGC
ATGTGCCACCACACCTGGCTTCCAGGGAATTTTTGATGTGGGGTGCTATG
ATCAGATACTCACAACAGAAACGAGGAGATTGAAGCCTGGTAAGATATAT
ATAGGGATGGTTGTATTCAGAGCCTTGAATTTTTAACCTGGGGGTGGCTG
AACTAGACTAGAGTAGGTTTGGCACAGTAGTTCTGATATGGTGCAAGTAT
ATTATTGAAAGGAAATGAGAGTAGGTGAGAGATCTGTCAGAGATAAAGAT
AATAGGTAAGGACTGGTAAGATGGCTCCTTGAGTAAAGTGTTTACAAGTG
TGAGGATCTGACTTCAGAATCTCAGAACCCATAGAAACAGACAGTTGCTT
GTCTGTATTCTTAGTACTCCAGTGAGGTGGGACAAGAGAGCGTATAGAGT
TTGGAGTATGCAGCANAGAACAGGAGACCCTATTCCTAATAGAAAGTCTA
TTAACCAGAGCTATTTGTAGATTGCTAGTAGTTACAATTGTGAGAAAAAT
GACAGAGAATGCTTGTAGCTAAGGGTTGTGCAGTACGGGCCAGGTGTGTC
CTCATGAATGAAGGAACTGCTCCTTGAACCACTAAAGGAGGAAGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_m24.b1 MSMg01no427_m24.b1 CHROMAT_FILE:
MSMg01no427_m24.b1 PHD_FILE: MSMg01no427_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:47 2005
         (439 letters)



>mm_chr18_32151325_32152163
          Length = 839

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%)
 Strand = Plus / Minus

                                                                       
Query: 25  attctcagtcaataacagctggctattcacccaatgttaaccacggtgacccttaccaat 84
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 592 attctcagtcaataacagctggctattcacccaatgttaaccacagtgacccttaccaat 533

                                                                       
Query: 85  ctgtccatgggcttgtctacttaaagggtgtcatctcccttagtacttcaggttgaaagt 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctgtccatgggcttgtctacttaaagggtgtcatctcccttagtacttcaggttgaaagt 473

                                                                       
Query: 145 accctctggagttttggagacagaagggaagctaacatcatgcccagttccctgtcagtc 204
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 472 accctctggagtcttggagacagaagggaagctaacaccatgcccagttccctgtcagtc 413

                                                                       
Query: 205 agactagcctcaaaccttagctccctctcccaccatccagctgtttatattcatccagag 264
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agactagcctcagaccttagctccctctcccaccatccagctgtttatattcatccagag 353

                                                                       
Query: 265 gaagagaggccaagcagaactcaagagtctatgcctctaagtagattcatgtcttccttc 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaagagaggccaagcagaactcaagagtctatgcctctaagtagattcatgtcttccttc 293

                                                                       
Query: 325 cactgtgacggagaagtgttgaattgctgcctttattggggtagcatccagactagtata 384
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 292 cactgtgacggagaagtgttgaattgctgcctttattggggcagcatccagactggtata 233

                   
Query: 385 agcaagtc 392
           ||||||||
Sbjct: 232 agcaagtc 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no427_m24.g1 MSMg01no427_m24.g1 CHROMAT_FILE:
MSMg01no427_m24.g1 PHD_FILE: MSMg01no427_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:47 2005
         (508 letters)



>mm_chr18_31932675_31933582
          Length = 908

 Score =  969 bits (501), Expect = 0.0
 Identities = 506/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgtagatcaggttggctttgaactcagaggcgtgcttctgcctcccagtgctagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgtagatcaggttggctttgaactcagaggcgtgcttctgcctcccagtgctagga 260

                                                                       
Query: 61  ctaaaggcatgtgccaccacacctggcttccagggaatttttgatgtggggtgctatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaaggcatgtgccaccacacctggcttccagggaatttttgatgtggggtgctatgat 320

                                                                       
Query: 121 cagatactcacaacagaaacgaggagattgaagcctggtaagatatatatagggatggtt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatactcacaacagagacgaggagattgaagcctggtaagatatatatagggatggtt 380

                                                                       
Query: 181 gtattcagagccttgaatttttaacctgggggtggctgaactagactagagtaggtttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattcagagccttgaatttttaacctgggggtggctgaactagactagagtaggtttgg 440

                                                                       
Query: 241 cacagtagttctgatatggtgcaagtatattattgaaaggaaatgagagtaggtgagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagtagttctgatatggtgcaagtatattattgaaaggaaatgagagtaggtgagaga 500

                                                                       
Query: 301 tctgtcagagataaagataataggtaaggactggtaagatggctccttgagtaaagtgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtcagagataaagataataggtaaggactggtaagatggctccttgagtaaagtgtt 560

                                                                       
Query: 361 tacaagtgtgaggatctgacttcagaatctcagaacccatagaaacagacagttgcttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaagtgtgaggatctgacttcagaatctcagaacccatagaaacagacagttgcttgt 620

                                                                       
Query: 421 ctgtattcttagtactccagtgaggtgggacaagagagcgtatagagtttggagtatgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtattcttagtactccagtgaggtgggacaagagagcgtatagagtttggagtatgca 680

                                       
Query: 481 gcanagaacaggagaccctattcctaat 508
           ||| ||||||||||||||||||||||||
Sbjct: 681 gcaaagaacaggagaccctattcctaat 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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