BAC Information

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BAC

Clone NameMSMg01-428H05
Chromosome18 (Build37)
Map Location 10,227,696 - 10,228,114
singlet/doubletsinglet
Overlap geneLOC635344
Upstream gene9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978
Downstream geneLOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428H05.T7 (MSMg01no428_h05.b1)MSMg01-428H05.TJ (MSMg01no428_h05.g1)
ACCAG521413AG521414
length754778
length of high quality
(start - end)
501 (50 - 550)442 (80 - 521)
definitionCHROMAT_FILE: MSMg01no428_h05.b1 PHD_FILE: MSMg01no428_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:38 2005CHROMAT_FILE: MSMg01no428_h05.g1 PHD_FILE: MSMg01no428_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTGTTCCTACCAAATGGATGAGAAGCACCTGAAAAAA
ATGTTCAACATCCTTAATCATCAGGGGAAAGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACCCAGGTGAC
AGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAAAGACTTCTCCATTGCT
GGTGGAATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCCGTTC
CTCAGAACACTGGGCATAGTACTACTTTTTGATCCAGCAATACCCCTCCT
GGGCATATATCCAGAAGATGTTTCAACTGGTAATAAGAACACATGCTCCA
CTATGTTCGTAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTATACA
ATGGAGTACTTCTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGG
CAAATGTAGGATATCATCCAGAGCGAGGTAACTCACTTACAAAAGAACAC
ACATGATATGCCACTCACTGATAAGTGTATACTATGTCAGAAGCTCATAA
TACCCAAGACAAAATTGCCCACCCCATGACCCTCACGATTAAGGTATGAA
CCAACCGTGGTTACTTTCGACCCTTCCCATGAAGGCGGAACTTATTTTCC
CCTG
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAGAGGACTGTTACAAA
GGAAGACATCTCCAAAGACAATCACTTGCTTCTGCCACACATCTGCTGTA
GATATCCACGCCATAAGGTGATGTAGCTAAGTGGTAGATCTTACAATGAA
CCCAAGGGTGTTAAATTTTAAACTTCTAAAACTGTGAGCTAAATAAGCCT
CTAATTCTTTATAAGTAGCCTGTGTTGGGTAGTTAATAATACTGTTGAAA
AGCTTACTTCTAGAGAAGGTATTTCTGTATGAGGTTACCATTTGAATAGA
TAGGCTGAAAAAAGCAGCTTACCCTCTCTTATGTGATTGGGCACCATCCA
ATTCCTTGACCTCAGTAGGATAAAAGGGCAGTGGAAGATTTGACTTCTGT
TTGTCTGGCTGCTTGCTTTGCCAACTGGTAGGTTGTAGACTTTTCCGTTT
CTGTAATCATGTAAAGCAACACTGTATATTACAAACAAATGTACACACAT
GCAGTATGTATATTGCATATGTTCTTTTCCCTATTGGTCCGCTTCTCCGA
GAACTGTGAACTGCTAGGGAAAAACCGTTTTATCTTGTTAAAACCAATAT
CTGACTGGGCTTTGTAATTATTAAAAGTTTTTCCGATAAAAGGGGCTCCT
TAAAACACCTCTTCCACACCCCACCTTTGATCCTATTTCTTTCTTACTTT
CCGTATTGGTTTTAAACTCTCTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_h05.g1 MSMg01no428_h05.g1 CHROMAT_FILE:
MSMg01no428_h05.g1 PHD_FILE: MSMg01no428_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:38 2005
         (442 letters)



>mm_chr18_10227696_10228537
          Length = 842

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggagaggactgttacaaaggaagacatctccaaagacaatcacttgcttctgccaca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 419 tcaggagaggactgttacaaaggaagacatctccagagacaatcacttgcttctgccaca 360

                                                                       
Query: 61  catctgctgtagatatccacgccataaggtgatgtagctaagtggtagatcttacaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 catctgctgtagatatccacgccataaggtgatgtagctaagtggtagatcttacaatga 300

                                                                       
Query: 121 acccaagggtgttaaattttaaacttctaaaactgtgagctaaataagcctctaattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acccaagggtgttaaattttaaacttctaaaactgtgagctaaataagcctctaattctt 240

                                                                       
Query: 181 tataagtagcctgtgttgggtagttaataatactgttgaaaagcttacttctagagaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tataagtagcctgtgttgggtagttaataatactgttgaaaagcttacttctagagaagg 180

                                                                       
Query: 241 tatttctgtatgaggttaccatttgaatagataggctgaaaaaagcagcttaccctctct 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tatttctggatgaggttaccatttgaatagataggctgaaaaaagcagcttaccctctct 120

                                                                       
Query: 301 tatgtgattgggcaccatccaattccttgacctcagtaggataaaagggcagtggaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tatgtgattgggcaccatccaattccttgacctcagtaggataaaagggcagtggaagat 60

                                                                      
Query: 361 ttgacttctgtttgtctggctgcttgctttgccaactggtaggttgtagacttttccgt 419
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  ttgacttctgtttgtctgactgcttgctttgccaactggtaggttgtagacttttccgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)